LOC111194809


Basic Information

Item Value
gene id LOC111194809
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30030923 ~ 30033401 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651292.1
AAAGATGGTTTAATTTCTATTGTTTAGTACATTTATTGTTTCAAGAACCTCCAGATAACACATAATGTAAATGTTCCAGGTAGAACCTTTACATTTGTACAAAATGAAGGTTCtttcaacttaaaaaaaaaataaggaaccCAATAAAAGCACCTCAAAAAGTGAATCCCACCTAATCCCAACTCATaccctgcattcacactggcaggcaaccattcatttcctatgtaTGGAAGCGATTTGTAGCCGTAATTCAGCAAGAGGCAACACAACAACAATTATACGATTATTAATACGAGATtatttggaccaatcacagacgCAGGGGTCCGATAATCATCCAATAATCATCATAAAccaattattctgttttatacaATGTATCTTTGCTCAAATACAGGGATTAATACTTTTGGAGAAAGATGATGTAGAGTGAATGAAAGTAGCGGATGGCTCAATAGCTAGCTTAGTGGATTAGCGTCCATGCTAACCcattatacatacacacacacacacacacacaaacaagacGAACTTGGGTCATCGCCTGCCAGTGTGAAAATGCGGGGTAAGAGTGGTCACTGAGATCTGAAAAGTTCTTAAAAAGAGTGCATCCTAATATAGTGCTTTTCCATCGACGTGAAACCGGCTCTGTTCTGTTTTGCAAACCTAATTTAGAAGTGTTTGCAGTGTTTCCACCAACATATGTAGGTTCAAGAACCAGGAACTGAAGAGAGCTAGGTTCTTCAGCACGAACTGTGACCCCTTCTGTTCACCACCGCTGTGGagcgccctctgttgatgacatATGATGTAGCGTTTTGaaggttccactaaaactggtggaaattgACCGCAGTTCTTATAAGCCTGAATGGAACTGGTTCAAAAACCAAAGTTCTCTTGGTGGAAAAGAACTTCATTAATCTGTcactcaaaacattttttattattattattcttacaAAGAACCTCCATATAAAAGGTCTATTCAAATGTGATtggacaaaatataaaaaaagaactaaattatgtcaaaaaaaatcaaaaatgccATTTTTGTTACagacacataaatatatacacaaacagacaaacacacacattgggGACCTTACTTGGGgaaacgtttttatttattttttgtccgCATTGCTCGTCTACAGGTCTATATCATCAAATGCCTTATTCATAGTTCAGGACTACTTTACAGGACTTTTATTGTGTAACGCCCGCTCCTGCATACACACACCCCCTCCCACTGTACCAGCAGCTCAGTTCATCAGCCGTCATCTCCTCCTGTCTACacatttgcttgtttgtttgtttattttgtcatAATTTTGGGACCATTTGTGCGTGTTTGTTTGTTCTCTCAAAGATTTTACAGGATTTTACTGgaataaaaattatgtttaagaaaaaaataacaacaactgAATGTTAAAAAGTATTGCTGTtcatgaatattttatttttgattgtttttttcgttcgttttggtttgtttacctGGATGAAGCCTTACCTTGGAATGGAAGTCAGTGAGTGAGCGAGTCGGGTGATGTACGGATGACTCTggtgtttaattaattaatttattctcGGTCCCCTAACGTGGAGCAGTGATGCATCGTCGTCGTAGTTCAGTCTGTCTCTTATGCACTTTTtctgagggggaaaaaaaaaatttaaatcaaaaataaataccATTCACTTGTATTCACTGTAGAAACCATTCAGGCTGTTAGCATTGGCTGTGCTAGGCTAACTATGGTAAATGCTAATGGCTTTAAGAACAAACTCTCCAATTCTCTCATCCATTGTGCTATTCTCGTATTATCCACACGATCATATCAAACTACACTATGATGTTGGTGTAAATCCCCAAAGACCACCCATATCACCCCCAGATTGCACTAATCCATCATTCTAGATTAGGAATAAAGGTTGCAGTACGCAGTTTGTAAACGTACCAGTttgataaatgaataaattggaTCTACATTCTCATGGTTCTGATGGAAGATCCCACAGTTTGGCTCCATCATCCCACAGCTGTATAAAGTCCACCACTCATGCCTGTATAAAAGCGTAGCATTTGGGAACATCTATTAGCCTTGTTAGCTGTGGCAGAACCGCTAATCTGCTAATCATCCCGTACATATGATAGATAAGTTTTGTTTTGATCTaatgtgataatttttttttatttgttttgttttggggggggggggcagacaGCCATGGCCTCTGTAATGACCCATGAGTTGATTTGGAAATCTGGAGGGAGGGTGGGAGGGGGGCAAGAAAATAAACTGTTCGTAGTCTCTGTAGCTGTAACGATTACATGTGTTCACCATTGAGATTCCATGGAGTAAGGTACAAATGTCAAAACCTGTTTGAGTCAAATAAAAGAATTAAGCACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651292.1 True 2430 lncRNA 0.38 2 30030923 30033401

Neighbor

gene id symbol gene type direction distance location
myo5a myo5a coding upstream 3175 29901316 ~ 30027748 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding upstream 132494 29889893 ~ 29898429 (+)
LOC107196975 NA coding upstream 146317 29875774 ~ 29884606 (+)
LOC111194842 NA coding upstream 287896 29741061 ~ 29743027 (+)
LOC111194806 NA coding upstream 296251 29729350 ~ 29734672 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding downstream 3010 30036411 ~ 30088710 (+)
LOC103035823 bcl2l10 coding downstream 56898 30090299 ~ 30102977 (+)
lysmd2 lysmd2 coding downstream 398046 30431447 ~ 30441876 (+)
LOC111194807 NA coding downstream 628481 30661882 ~ 30672269 (+)
LOC111194808 LOC102215143 coding downstream 764737 30798138 ~ 30800224 (+)
LOC111194812 NA non-coding upstream 156611 29870910 ~ 29874312 (+)
G161532 NA non-coding upstream 214323 29813621 ~ 29816600 (+)
G161511 NA non-coding upstream 306802 29723894 ~ 29724121 (+)
G161508 NA non-coding upstream 373435 29656690 ~ 29657488 (+)
G161503 NA non-coding upstream 384018 29625023 ~ 29646905 (+)
G161612 NA non-coding downstream 34615 30068016 ~ 30127142 (+)
G161620 NA non-coding downstream 107314 30140715 ~ 30140944 (+)
G161622 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding downstream 128703 30162104 ~ 30213901 (+)
G161677 NA non-coding downstream 183101 30216502 ~ 30216804 (+)
G161682 NA non-coding downstream 218181 30251582 ~ 30252005 (+)
G161331 NA other upstream 914128 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1271916 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1406138 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2234419 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2911659 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 320285 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 821157 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 841637 30875038 ~ 30878327 (+)
efhb NA other downstream 1551345 31584746 ~ 31605490 (+)
G162017 NA other downstream 2035461 32068862 ~ 32148190 (+)

Expression


Co-expression Network