LOC111194812


Basic Information

Item Value
gene id LOC111194812
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29870910 ~ 29874312 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651295.1
CGTGGCAGATTCATCCTGCTCTTTTTTTACAAACTGGGAACGTCATCAACCACATCAGACTGTTTGAGCAGCGAGATGTGGACTTGAACATTTCGTTTACTTTATAAACGCATCATTAGCATACGAGCGAATAGTGATCCGAGTTCACATCTATCTGCGAAAGGAATTTGAATGCGGTGTTGTgtaagtgaaagtgaaagtaacgAAGGACAAGCAAGAACAAAGgtctgatgtttaatttcaagaaaaaaacataaagaatcTTCAAAAGACCTTCAAAATGAGTTCATGTGATGACGAAGATGACATTCTCAAAAATAAAAGCTCAGATTCACCTGaatccagctgtgtgtcctTAAAGAGTGACAAGTCAATGGGTATTCCATTAAAATTTATGGAGGGAAACGCTTCAGAAGAGAGtctAATTGAGAAAGAAGGGTCAGATTCTTCTGAACTGAGCTGTGTGTCAATGAAGAGTGACCAGTCAATGGGAATTCCAATTAGATTCAGCAATGGAGGCTCCTCCGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651295.1 True 529 lncRNA 0.39 4 29870910 29874312

Neighbor

gene id symbol gene type direction distance location
LOC111194842 NA coding upstream 127883 29741061 ~ 29743027 (+)
LOC111194806 NA coding upstream 136238 29729350 ~ 29734672 (+)
thsd4 thsd4 coding upstream 155308 29606057 ~ 29715602 (+)
lrrc49 lrrc49 coding upstream 272003 29521777 ~ 29598907 (+)
tm2d3 tm2d3,LOC108439026 coding upstream 384896 29476685 ~ 29486014 (+)
LOC107196975 NA coding downstream 1462 29875774 ~ 29884606 (+)
LOC103032796 arpp19a,LOC108413875,LOC107704273,LOC108264505,LOC107676482,LOC107712699,LOC103358163 coding downstream 15581 29889893 ~ 29898429 (+)
myo5a myo5a coding downstream 27004 29901316 ~ 30027748 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding downstream 162099 30036411 ~ 30088710 (+)
LOC103035823 bcl2l10 coding downstream 215987 30090299 ~ 30102977 (+)
G161532 NA non-coding upstream 54310 29813621 ~ 29816600 (+)
G161511 NA non-coding upstream 146789 29723894 ~ 29724121 (+)
G161508 NA non-coding upstream 213422 29656690 ~ 29657488 (+)
G161503 NA non-coding upstream 224005 29625023 ~ 29646905 (+)
G161502 NA non-coding upstream 231284 29620397 ~ 29639626 (+)
G161599 NA non-coding downstream 90989 29965301 ~ 30033221 (+)
LOC111194809 NA non-coding downstream 156611 30030923 ~ 30033401 (+)
G161612 NA non-coding downstream 193704 30068016 ~ 30127142 (+)
G161620 NA non-coding downstream 266403 30140715 ~ 30140944 (+)
G161622 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding downstream 287792 30162104 ~ 30213901 (+)
G161331 NA other upstream 754115 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 1111903 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 1246125 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 2074406 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 2751646 27109671 ~ 27119264 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 479374 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 980246 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 1000726 30875038 ~ 30878327 (+)
efhb NA other downstream 1710434 31584746 ~ 31605490 (+)
G162017 NA other downstream 2194550 32068862 ~ 32148190 (+)

Expression


Co-expression Network