LOC111194824


Basic Information

Item Value
gene id LOC111194824
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39799040 ~ 39802192 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651302.1
TGCTCAGCGTGAAGCTCGCTTGACCATCTAAAATCGTCTTAGTGCTAAGAACGTTTtggggaaacccacccctgctGTTCTGTTATTTAGATTGGCAAGTGGCTAGCAACATTTGCATTTGCAGGATCATGGCAAGGAGGAACTTAATTTTGCGCTGTAGGCGTACACTGAATGACTGCACTCGTCTTCTCCTAACAGATGACCCTGGACCTGATGTACGCCAGTCAACGTTAATAAGGTTAGAAACAATGCAAAGGAGCCTTGAATGGGCAAGGGGGAGGCTGGTAAATGTCTCTACAGCAGATCGTCTCATCAACGACATAACAGAATACTGCCAGGAGGTTAGGACAAGCATCCAGGATCCTCAAGCCAGTTCCAGGTACCAAGCACCACTGAGGTGGAGTAGCTCTCGAGGTCGTccccattactccatcactagagaccagttgttgtttttaagaTCAGTGTGGCTTTACGGTGTCACAAATGGCAGATATTTTGAATGTGTCTTTGAATACAGTGAAACGTCGTCTAAGACACTTTGGTCTCTCACGGTCTTATTCTGAAATGTCAGACTCCGTCCTGGATGACACAATCAGGGATCTGGTAGCTGGAAATGACCAGCTTGGACCAGAAGCTGTTAGGGCACAATTAGGCGCGTCAGGAATTCGTGTGCAGAGATCCAGAGTACGGGAGAGCATGCGGCGGGTTAATCCTACAGCAGCGGCCCTCCGAGCAATGTCTCAGACACTGCACCGAAGAAGGTACCATGTTGCTGGCCCAAACTCTCTGTGGCATCTAGATGGGAAACACAAATTGATAAGGTGGAGGATAGTTATACACGGGGGCATTGACGGATACAGTCGACTCATTGTCTGCCTACGTGCTTCCAACAACAACCGGAGTAGCA

Function

GO: NA

KEGG:

id description
ko04310 Wnt signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651302.1 True 910 lncRNA 0.49 5 39799040 39802192

Neighbor

gene id symbol gene type direction distance location
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding upstream 306964 39487766 ~ 39492076 (+)
pik3c2a pik3c2a coding upstream 461162 39271936 ~ 39337878 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding upstream 607635 39185222 ~ 39191405 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding upstream 623902 39173324 ~ 39175138 (+)
LOC111194738 LOC104947953,LOC106536897 coding upstream 704233 39092479 ~ 39094807 (+)
LOC111194742 NA coding downstream 12804 39814996 ~ 39820624 (+)
LOC103034226 NA coding downstream 35845 39838037 ~ 39927918 (+)
LOC103039568 sox9 coding downstream 462471 40264663 ~ 40270386 (+)
LOC103036843 sstr5,LOC108241368,LOC103468864,LOC107083133,LOC106942343,LOC103140984,LOC102219310,LOC106518680 coding downstream 957083 40759275 ~ 40765548 (+)
LOC111194726 sstr5,sstr2,LOC106601899,LOC101075299,LOC106606408 coding downstream 1104949 40907141 ~ 40910721 (+)
G163693 NA non-coding upstream 5021 39793612 ~ 39794019 (+)
G163691 NA non-coding upstream 8253 39790365 ~ 39790787 (+)
G163689 NA non-coding upstream 8983 39789834 ~ 39790057 (+)
G163604 NA non-coding upstream 189008 39609482 ~ 39610032 (+)
G163606 NA non-coding upstream 237695 39554318 ~ 39561345 (+)
G163713 NA non-coding downstream 51187 39853379 ~ 39928814 (+)
G163721 NA non-coding downstream 178200 39980392 ~ 40013363 (+)
G163722 NA non-coding downstream 179197 39981389 ~ 40002482 (+)
G163769 NA non-coding downstream 256150 40058342 ~ 40058608 (+)
G163772 NA non-coding downstream 307206 40109398 ~ 40114303 (+)
reln reln other upstream 10586 39575089 ~ 39788454 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 2387071 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 2446261 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 3044353 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 3629295 36132415 ~ 36169745 (+)

Expression


Co-expression Network