G172136


Basic Information

Item Value
gene id G172136
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 145219 ~ 203802 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233043
ggacgggactaaaattaccggaggagcacggagttcagagaaaaacagtagataattcagcctgtaattttctcagaggacgtctgagaaaaacacctacatgatcgttctggacaggaataaaatcacagaggataaaaaaaaaaacataaaagagaaaattacccagaaccccctgagaaaataatcccatccagatagggctttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233043 True 209 lncRNA 0.40 2 145219 203802

Neighbor

gene id symbol gene type direction distance location
LOC103027009 LOC108425225 coding upstream 17226 121443 ~ 127993 (+)
LOC103026711 NA coding upstream 29582 109695 ~ 115637 (+)
LOC103042590 LOC108425226,LOC107706806,LOC107588954 coding upstream 36838 67586 ~ 108381 (+)
LOC103028768 tpst2 coding upstream 118945 19230 ~ 26274 (+)
sez6l sez6l,LOC107741658,LOC107758626,LOC106568453 coding upstream 128525 2693 ~ 16694 (+)
LOC111194996 LOC108425217 coding downstream 369 204171 ~ 216693 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding downstream 40306 244108 ~ 274270 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding downstream 128220 332022 ~ 339082 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding downstream 148798 352600 ~ 371990 (+)
brap brap,LOC107706763,LOC107712082 coding downstream 256646 460448 ~ 471421 (+)
G172130 NA non-coding upstream 60371 84384 ~ 84848 (+)
G172118 tacr1b,LOC108425229,LOC107689601,LOC107741654,LOC107589026,LOC107579787 non-coding upstream 85986 57149 ~ 59233 (+)
G172099 NA non-coding upstream 127230 16902 ~ 17989 (+)
G172151 NA non-coding downstream 51504 255306 ~ 256401 (+)
G172161 NA non-coding downstream 94739 298541 ~ 450016 (+)
G172166 NA non-coding downstream 115493 319295 ~ 330527 (+)
G172168 ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC105014760,LOC107599129 non-coding downstream 138583 342385 ~ 349221 (+)
G172169 NA non-coding downstream 152241 356043 ~ 417595 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 80650 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 94628 29536 ~ 50591 (+)
LOC103039814 vdac2,LOC107704122 other downstream 231971 435773 ~ 482936 (+)
LOC103038248 NA other downstream 375521 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 639986 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 1179693 1383495 ~ 1544956 (+)
G172517 NA other downstream 1303518 1507320 ~ 1542151 (+)

Expression


Co-expression Network