LOC103025596 (purb,LOC108425219,LOC103372361,LOC107099159)


Basic Information

Item Value
gene id LOC103025596
gene name purb,LOC108425219,LOC103372361,LOC107099159
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 195126 ~ 232335 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233047
CCCCGAGGGCACCTCCATCATGGTGGACTCCAAGCGGTTCTTCTTCGACGTGGGGGCGAACAAGTACGGCGTGTTCCTGCGGGTGAGCGAGGTGAAGCCCAGCTACAGGAACTCCATCACCATCCCCTTCAAAGCCTGGAGCAAGTTCGGCGGAGCCTTCTGCCGCTACGCCGAGGAGATGAAGGAGATCCAGGAGAGGCAGCGGGACAAGATGTACGAGCGGAGAGAGGAGTCGGAGGGCGAGGACGTGGACGACGACTGATCGTGGTCCTGGTGGCCTGGTCCTGGGTGTGGGTCTGGGTCTGATCCTGGGCCTGGGCCTGGTCCTGCTACCGGCTTGGATGAGGTTCTTCTGCTCCTAAAAGTTGTTGTTTATGAGATTGCaggacttaaaaaaacaaagtgcatgacttgatgatgatgatgatgatgatgatgatgatgaactTGGTGATGAATCGGATTCGAGACGATAGATAGCCTACTAAAAATATTGTGGAGTGATGTTCATTTGACAGAAAATACTAGATTATAAGGTCTGtgaagtgtgtggtggtggtgatgatgatggagaaggagatgaagatgatggagatttggtttggagagaaaaacccGTCTATAAAGCCATGACCTCTCATTGAGAGGGCGAGTGGTGGTCCATTTGTTTGTTCCATTGAGGTGTGAGTACTGAGTACTGATTACTGAGTACTCAGTACTGATGATTACTGATTACCGAAGGCCACCCTCATCCTAAACCAGCAAGTTCAGCTGTCTGCGGAGAAAAAGAACATCTACTTCAATCTCTAAAACTGCAAAACACTAAAGCTGCTGAATCCGGGACGGACAGAACACCGGAACCCGACCCGAGGCTGACCCGAACCCGAGAGGATGTTCAGCACATTGTGAAGAGTATAGTCTCAGTATAGTCTCAGTTTAGTGAGGCATAGGCCTGGTCTCTCAGTCTTGGTTCTGGTTTCTCAGTCTTGGTGCTGAAGtcacattttagtgattttccTGCGTTAAAACACCAACTGTAACAAAAAGGGCTGAGTATTTGCAAAAACGTAAGAACGTAAGTGTTTGCAGGAGTTACAattcaaaataatgcaaaaacgtATCTGTAATATAAggcgatatattgtgattattgcaAAATCTCTATTGGCAAGAACCTAAGATCTTATCATACTCCTGGATTCTGTGTTTAATGTGAGCCAGTTTGTTTTTCAGATATTCACATCTCTCCTTCTTCTCAAGAAACGAAGGATcctgtaaaacaaaacattacatttactgtttactgtctACATTACTATTGTTTATTTACCTACATTCAAACAGGAAGAGTTTTGTCCAAGATCGCCATGAACACATCATAAAACATATCTACAC
>XM_022680753.1
GCTCGACCAATGGGATCTCAGCGGTCCGTGCTGGAGGGCGGCGTGAAGGCGGCGGGTTGCTGTGTCGGCGGCGGTGCAGGCGCGGGGAGAAGCGGGCTGCGGAGGTGAAGATGGCGGATGGAGACAGCGGGAGCGAGCGCGGCGGCGGTGGAAGCAGTGGCGGAGGGGGAGGAGGAAGCGGCGGGGGCTTCCCGCACCTCCAGCGGGAGCAGGAGACCCAGGAGCTGGCGTCCAAGCGGCTGGACATCCAGAATAAGCGCTTCTACCTGGACGTGAAGCAGAACTCGAAGGGCCGGTTCATTAAGATCGCGGAGGTCGGAGCCGGGGGCTCCAAGAGCCGTCTGACCCTCTCCATGTCGGTGGCGGCCGAGTTCCGCGACTACCTCGGCGACTTCATCGAGCACTACGCCCAGTTGGGGCCCAGCAGCCCGGAGCAGATCGCTCAGTCCTCCGGCGGCGGGGAGGACAGCGGGCCGCGGCGGGCGCTGAAGAGCGAGTTCCTGGTGCGGGAGAACCGCAAGTACTACCTCGACCTGAAGGAGAACCAGCGGGGGCGGTTCCTGCGGATCCGGCAGACCGTCAATCGAGGCCCCGGCTTCGGCGTGGCAGGCCCGGGCGGCGGCATGCAGGCCGGCCAGACGATCGCGCTGCCCGCGCAGGGCCTGATCGAGTTCCGCGACGCCCTGGCCAAGCTGATCGACGACTACGGCGGGGAGGACGAGGAGCTGAGCGGCGGGGGAGGAGGGGGCCCGGGGGCGGGCGGCTACGGCGAGCTCCCCGAGGGCACCTCCATCATGGTGGACTCCAAGCGGTTCTTCTTCGACGTGGGGGCGAACAAGTACGGCGTGTTCCTGCGGGTGAGCGAGGTGAAGCCCAGCTACAGGAACTCCATCACCATCCCCTTCAAAGCCTGGAGCAAGTTCGGCGGAGCCTTCTGCCGCTACGCCGAGGAGATGAAGGAGATCCAGGAGAGGCAGCGGGACAAGATGTACGAGCGGAGAGAGGAGTCGGAGGGCGAGGACGTGGACGACGACTGATCGTGGTCCTGGTGGCCTGGTCCTGGGTGTGGGTCTGGGTCTGATCCTGGGCCTGGGCCTGGTCCTGCTACCGGCTTGGATGAGGTTCTTCTGCTCCTAAAAGTTGTTGTTTATGAGATTGCaggacttaaaaaaacaaagtgcatgacttgatgatgatgatgatgatgatgatgatgatgaactTGGTGATGAATCGGATTCGAGACGATAGATAGCCTACTAAAAATATTGTGGAGTGATGTTCATTTGACAGAAAATACTAGATTATAAGGTCTGtgaagtgtgtggtggtggtgatgatgatggagaaggagatgaagatgatggagatttggtttggagagaaaaacccGTCTATAAAGCCATGACCTCTCATTGAGAGGGCGAGTGGTGGTCCATTTGTTTGTTCCATTGAGGTGTGAGTACTGAGTACTGATTACTGAGTACTCAGTACTGATGATTACTGATTACCGAAGGCCACCCTCATCCTAAACCAGCAAGTTCAGCTGTCTGCGGAGAAAAAGAACATCTACTTCAATCTCTAAAACTGCAAAACACTAAAGCTGCTGAATCCGGGACGGACAGAACACCGGAACCCGACCCGAGGCTGACCCGAACCCGAGAGGATGTTCAGCACATTGTGAAGAGTATAGTCTCAGTATAGTCTCAGTTTAGTGAGGCATAGGCCTGGTCTCTCAGTCTTGGTTCTGGTTTCTCAGTCTTGGTGCTGAAGtcacattttagtgattttccTGCGTTAAAACACCAACTGTAACAAAAAGGGCTGAGTATTTGCAAAAACGTAAGAACGTAAGTGTTTGCAGGAGTTACAattcaaaataatgcaaaaacgtATCTGTAATATAAggcgatatattgtgattattgcaAAATCTCTATTGGCAAGAACCTAAGATCTTATAATCATAATACAGGATACAGAACTTAGAGATTTAATAgaagctttcttttttttatccagtcaAAACAGTGGAATCGACGATagatgaaccacttctgacaccaatcttctCTAATCTAAACTaatagtaattaaattaaaatgaaacctATTTAACCTTACCAATTACCAATACCCCCACTTTAACCCCACCTTCCATAATGATCTGATTGTTTGGATCAGGAATGTTGGGAGCAGGGAAACACTGAGCACTAAGGCATGCAGGGTAGTGAACCTCCAGAACCAGGGCTGAGAAATCCAGGCCTAGAACTCAACAGAGCCTCGACCATGAATCAGCCTCAGCAGCGGCTCGGTTTTGGCTAGGACtgtatgtaataatgtaaaaatgagTAACGTCGGTCAGAGTGGTCAGAACAGACCTGAGGAAACTAGTTATCTAACAGTGCTGTCACTCTCTCAAACCTGCTCGTCATACCTGCTGTTCTCAGGAGCTGCACAGGCTCTGGcatttcttagttttttattataagGGCGCAACTCTACCTGATAAGCCATAGAAACATTAGAAACGCCCATCACCATAAATAAATCTCAGATCACACATTAAATCACGTTAAACTGAAGTCTGAGGGATTGGCGATCTTCAGACGATCTTTAAAACAGACAGGAGATCTTCTTATATTTTCATCTCAGATCATGAAGCTAATCCTGCAGACtttaaaccattttttattttaaattttatttcagaattCATCTAATGCATCTAAACTCACTGCTAAACTCTATAAACTGAGAGCAGAAAACCAGAGCTTCGTCTTCTTCTGTGGTGAGACGTTTTAGACTAAACTCACACCAACAATACGAGCCATAActcaaaatcaaaaatcaaaatctCTGGTTGAATTCATTTAGAATTACATTAGAGATCTAAAACTGCACATATCCTAAATGAACCCGTTACTACTAGTCTgaactaaatatatttagagATATATTAGAGAATTATAATTTGTACTAGtcagagtttattttatttatggatATATGGAACTGGAGTTTATACTAGATTTAAGAATTACAATAGAGACATGCTATTATACTTATTCTactagacatttaaaataaagtaattataaatatttgtaactGTATTTCTTACTCTTAGACTAGTCAGAATTACAATGTGGATATGTAATTATAATTTCTACCAATAATAGTAaagtaattataaatatattttactgtagttcttattttaataaatgtaattattgatAAGAAAATCAATGGGAACCTGTGATCAGTCAGATTTACAGTGAGGATATGTGGTGCTGGTCATGTGACTAGTCTGAATGCATTTATAGatctgttgattaaaatgtataaactcCAGTGCAGAGATCTGTAATTTAAGCTTTtctggtaaaaacaaaaaaaaaacacattttatagttTAGGATTGGTGTgattttttaattctaaaattTTTCGCCTTATTTTTCTTCCAGTTTGGGTCCAAATCTCAGTGACAACATTAGAAAGAATAGTTAGTTTCCTCTCTCTGGATCAGTCGGAGAACCTGAGGCAGTGCAATGAAACCACactcccttttttatttaaagaaaagaaaaatgcagagatgaatgttttccttttcttcccttcttttctcttttctcttttttgtttgtttgtttagaagaATTATGAATTATAAAGATTACAGATTATTCTTTATGACAGAAGTACTGAACAAACCagcatatttttaatacataaaatagaACTTATATGTGTATTACAGAATTATTAAAGCCTGAGAGGCgaattttataaaaaagaaaaaagtgagatGGGATTTGAAGACTGTCcagtgtatttgtttgttttcccaaaAAGTGTTTAGTAAGAGTATAGCATCTATATAAAAGcgttataatgataataatgatgatgatgatgatgtatcttgacagtttattattttaattatttcagatTATTGATCCTCATCCCATCTCCTGCACTGCGTAGAAATATATGTTTACATTATACTCATTCTCCATTATTTGCTCCTTTTTTGGgtctaaattacttaaattgcTCCTCTTAAAGGGATAGTTTATCTAGGCAGAGCTAacaaggctaatgctaattgaaaaagaaaataaatatatgaataaataaataaataaatgtatattgtagCTGATTAGTATGATGTCATGCTGAACAGCATAtcatatattttctttgttatttaggcCAATACGATTGACCTTTCCCTTTagtttaatatcatttaatttGATGTTATAAGAAATGATAGCGCTCACATATATCAAGTGGTCCTTTATTATGAATTTATCAATTTATGAATTCTATATTGTGCATGCCTGTCCCCACATtgccttttatttaatttattaattatataagcTTAGTGTTTTgtgattgtttatttgtttttaccctCCAGAACATAAATATTAACGGGCAAGCAAAGCAAAACACCAGGTCATTTATTTAACCCCTTCAGGGCTGGGCTGATACggcaaaaatattatatcatgatctctatctttttatttattttcatttctttctgGAAACAGTAGACAAAATTGACCAGTAGCTTCAGACTCtgaaaaactatattaaaacaATTCAAATATATTCACATATTATAGGgctttagtaatttaatttgatttatattcTAAATGTGCTGCATTTCATCAGTACTGATGAACACTGTTATAAAACCTAcacaatattgtatattatacttttattgtaattgaaaatactgtaatttcacCATAACTGAAAATTATGTAGTGAATTTGACATATATAGTCTGCCTCTATTAGATATGTTTATAACTGTTTAAAttagtaattatatatataaatttatatagtGCAGCTCTAATGTGTGCTACGATTAAATTGATCACGATATGATAAGACGTTGTGGTATTGCCCGGCCCTCCACATTTAGCAGATGTTTTGTTTGAAACTCGTCATGTATAtcgttttatttcttttccttATGATGAATGTGAGTTATCTGAGTTACCCAAGTATACCGTTGGTTTTTGGCCGTGGAAAGTAAAGGTgtgttatgatgatga

Function

symbol description
purb Enables RNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
PREDICTED: transcriptional activator protein Pur-beta

GO: NA

KEGG:

id description
K21799 PURB; transcriptional activator protein Pur-beta

RNA

RNA id representative length rna type GC content exon number start site end site
TU233047 False 1395 TUCP 0.45 2 195901 232335
XM_022680753.1 True 5101 mRNA 0.41 1 195126 200226

Neighbor

gene id symbol gene type direction distance location
LOC103025911 NA coding upstream 2311 189817 ~ 192815 (+)
LOC103026214 NA coding upstream 7986 183143 ~ 187140 (+)
LOC111194997 NA coding upstream 18532 173005 ~ 176594 (+)
LOC103027926 cnnm4,LOC108277002 coding upstream 48931 129033 ~ 146195 (+)
LOC103027009 LOC108425225 coding upstream 67133 121443 ~ 127993 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding downstream 11773 244108 ~ 274270 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding downstream 99687 332022 ~ 339082 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding downstream 120265 352600 ~ 371990 (+)
brap brap,LOC107706763,LOC107712082 coding downstream 228113 460448 ~ 471421 (+)
ptpn11 ptpn11,ptpn11a coding downstream 281902 514237 ~ 531825 (+)
G172126 NA non-coding upstream 41641 132453 ~ 153485 (+)
G172130 NA non-coding upstream 110278 84384 ~ 84848 (+)
G172118 tacr1b,LOC108425229,LOC107689601,LOC107741654,LOC107589026,LOC107579787 non-coding upstream 135893 57149 ~ 59233 (+)
G172099 NA non-coding upstream 177137 16902 ~ 17989 (+)
G172151 NA non-coding downstream 22971 255306 ~ 256401 (+)
G172161 NA non-coding downstream 66206 298541 ~ 450016 (+)
G172166 NA non-coding downstream 86960 319295 ~ 330527 (+)
G172168 ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC105014760,LOC107599129 non-coding downstream 110050 342385 ~ 349221 (+)
G172169 NA non-coding downstream 123708 356043 ~ 417595 (+)
LOC103042277 cnnm3 other upstream 28672 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 130557 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 144535 29536 ~ 50591 (+)
LOC103039814 vdac2,LOC107704122 other downstream 203438 435773 ~ 482936 (+)
LOC103038248 NA other downstream 346988 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 611453 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 1151160 1383495 ~ 1544956 (+)
G172517 NA other downstream 1274985 1507320 ~ 1542151 (+)

Expression


Co-expression Network