G172169


Basic Information

Item Value
gene id G172169
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 356043 ~ 417595 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233087
ctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaataaccctgttttttaattacagttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccgtcttcctcttgattatattccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233087 True 255 lncRNA 0.35 2 356043 417595

Neighbor

gene id symbol gene type direction distance location
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding upstream 16961 332022 ~ 339082 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding upstream 81773 244108 ~ 274270 (+)
LOC111194996 LOC108425217 coding upstream 139350 204171 ~ 216693 (+)
LOC103025911 NA coding upstream 163228 189817 ~ 192815 (+)
LOC103026214 NA coding upstream 168903 183143 ~ 187140 (+)
brap brap,LOC107706763,LOC107712082 coding downstream 42853 460448 ~ 471421 (+)
ptpn11 ptpn11,ptpn11a coding downstream 96642 514237 ~ 531825 (+)
LOC103038879 NA coding downstream 118698 536293 ~ 541770 (+)
LOC103038565 LOC108425201 coding downstream 126185 543780 ~ 575333 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding downstream 171292 588887 ~ 837920 (+)
G172168 ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC105014760,LOC107599129 non-coding upstream 6822 342385 ~ 349221 (+)
G172166 NA non-coding upstream 25516 319295 ~ 330527 (+)
G172151 NA non-coding upstream 99642 255306 ~ 256401 (+)
G172136 NA non-coding upstream 152241 145219 ~ 203802 (+)
G172126 NA non-coding upstream 202558 132453 ~ 153485 (+)
G172198 NA non-coding downstream 54438 472033 ~ 488580 (+)
G172215 ddx55 non-coding downstream 87070 504665 ~ 506092 (+)
G172218 NA non-coding downstream 122105 539700 ~ 593909 (+)
G172266 NA non-coding downstream 347031 764626 ~ 822760 (+)
G172273 NA non-coding downstream 404872 822467 ~ 876253 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 123708 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 189589 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 291474 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 305452 29536 ~ 50591 (+)
LOC103039814 vdac2,LOC107704122 other downstream 18178 435773 ~ 482936 (+)
LOC103038248 NA other downstream 161728 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 426193 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 965900 1383495 ~ 1544956 (+)
G172517 NA other downstream 1089725 1507320 ~ 1542151 (+)

Expression


Co-expression Network