LOC103039814 (vdac2,LOC107704122)


Basic Information

Item Value
gene id LOC103039814
gene name vdac2,LOC107704122
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 435773 ~ 482936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233111
AGGTAGTGTTTGTCCTGCTGCGCTGCAGTAAATCAGAGATTTTCCCTCTGAAGAATAAATCagctttaattcagtgtttctgtgctgCACGGCTCCGGTACGATGGCAGTTCCACCAGTTTACTCCGACCTGGGAAAACCAGCGAAGGACATTTTCAGTAAAGGCTACGGTTTTGGAATTGTGAAGTTGGACCTGAAGACCAAATCTCAGAATGGAGTGGTGAGTTAATGACCTTTAATAAACTGATTCTGAACTGGATTTCCTCTTCCTACTAGTTTAatttattactatatttatggtttcttatttttttccagagttgtatttgGTGATAATGGCATTATTCTGTTTGAGTCTGTTTtgaatttggtttattttttactgtgaagctttaagagtgtgttgttgttttatgttacataatttattttgttacattattattattttatacataaatcAGCCTCTTGATAATGACTGTTTCTTTAACAAAATAGaaataatttcctttttttggggtttctgctgaatgtttgaaaatgtttaaaaatattttataactgTTATAATAATAGAATCAGTCTTTTTCATCATCGCAGCAAtagcctgaaatattgtgatattattttagagctgtatcgcccagccctaaatGAGCCCTACTATACTCAGCCTTACTCTACTCTCATTCTTTGCTTTTCCATTAGACAAACCAGGTtcctgtgttttctctgtgttttctctgtgttttctctgttttctctg
>TU233115
tgtttttctctctttatctaacAGCTGGCTCAAGGTTTGAAAGTATCTCTGGACACGTCCTTCGTACCGAACACAGGTAAGAAGAGTGGTAAACTGAAGAGCGGATATAAGCGGGATTATGTGAACGTGTCCTGTGATGTGGATTTGGAGGGTCCGGTGGTCCACTCCGCCGCGGTTCTGGGGTACGAGGGGTGGCTGGCGGGGTATCAGATGGCGTTCGACACGGCAAAAAACAAACTGATCCAGAACAACTTCGCTCTCGGATACAAAACCGGAGACTTCCAGCTGCACACCAACGTTAATGACGGGACGGAGTTCGGGGGGTCGGTGTATCATAAGGTGAATGATCAGCTGGAGACGGCGGTGACTCTGGCCTGGACCGCCGGCAGCAACAACACTCGCTTCGGAGTCGCCGCCAAATACCAGCTGGACCCTGACGCCTCTCTGTCTGCCAAAGTGAACAACGCCAGTCTGATTGGAGTTGGTTATACTCAGAGTCTGCGACCaggtaatacatttttttttttttttctttttttttttttttttttACCTCTTCCTCTACAGAGCGCTGTCTGTGCTCCTCATTCAGCTCC
>XM_022681512.1
AGCATCAGCACCGCACATCTGGATCAGAACCGCATTAGAACTGAGAGATTTgtggcgttttcacaccagatCCAGATCAgGTACGATGGCAGTTCCACCAGTTTACTCCGACCTGGGAAAACCAGCGAAGGACATTTTCAGTAAAGGCTACGGTTTTGGAATTGTGAAGTTGGACCTGAAGACCAAATCTCAGAATGGAGTGcAGCTGGCTCAAGGTTTGAAAGTATCTCTGGACACGTCCTTCGTACCGAACACAGGTAAGAAGAGTGGTAAACTGAAGAGCGGATATAAGCGGGATTATGTGAACGTGTCCTGTGATGTGGATTTGGAGGGTCCGGTGGTCCACTCCGCCGCGGTTCTGGGGTACGAGGGGTGGCTGGCGGGGTATCAGATGGCGTTCGACACGGCAAAAAACAAACTGATCCAGAACAACTTCGCTCTCGGATACAAAACCGGAGACTTCCAGCTGCACACCAACGTTAATGACGGGACGGAGTTCGGGGGGTCGGTGTATCATAAGGTGAATGATCAGCTGGAGACGGCGGTGACTCTGGCCTGGACCGCCGGCAGCAACAACACTCGCTTCGGAGTCGCCGCCAAATACCAGCTGGACCCTGACGCCTCTCTGTCTGCCAAAGTGAACAACGCCAGTCTGATTGGAGTTGGTTATACTCAGAGTCTGCGACCaggtaatacatttttttttttttttcGACATTTCCTACAGGACGACATCTACAGGACACTCCCCACAGGAAGCCACCCActggacactgcccacaggacgatATCCACAGGATATTCCCTACAGGACGACATCTACAGGACAGTCCCCACAGGATGCCACCCATAG

Function

symbol description
vdac2 Enables channel activity and identical protein binding activity. Acts upstream of or within calcium import into the mitochondrion; fin regeneration; and regulation of heart contraction. Located in plasma membrane. Is expressed in several structures, including lens; pectoral fin; pericardial region; solid lens vesicle; and ventral mesoderm. Orthologous to human VDAC2 (voltage dependent anion channel 2).

GO:

id name namespace
GO:0043269 regulation of ion transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006820 anion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233111 False 765 lncRNA 0.34 3 440907 442605
TU233115 False 596 TUCP 0.51 5 443311 482936
XM_022681512.1 True 853 mRNA 0.52 8 435773 450525

Neighbor

gene id symbol gene type direction distance location
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding upstream 63783 352600 ~ 371990 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding upstream 96691 332022 ~ 339082 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding upstream 161503 244108 ~ 274270 (+)
LOC111194996 LOC108425217 coding upstream 219080 204171 ~ 216693 (+)
LOC103025911 NA coding upstream 242958 189817 ~ 192815 (+)
ptpn11 ptpn11,ptpn11a coding downstream 31301 514237 ~ 531825 (+)
LOC103038879 NA coding downstream 53357 536293 ~ 541770 (+)
LOC103038565 LOC108425201 coding downstream 60844 543780 ~ 575333 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding downstream 105951 588887 ~ 837920 (+)
LOC103021728 NA coding downstream 386595 869531 ~ 878891 (+)
G172169 NA non-coding upstream 18178 356043 ~ 417595 (+)
G172180 NA non-coding upstream 26794 408601 ~ 408979 (+)
G172172 pi4ka,LOC108425210,LOC101479673 non-coding upstream 43925 390736 ~ 391848 (+)
G172168 ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC105014760,LOC107599129 non-coding upstream 86552 342385 ~ 349221 (+)
G172166 NA non-coding upstream 105246 319295 ~ 330527 (+)
G172215 ddx55 non-coding downstream 21729 504665 ~ 506092 (+)
G172218 NA non-coding downstream 56764 539700 ~ 593909 (+)
G172266 NA non-coding downstream 281690 764626 ~ 822760 (+)
G172273 NA non-coding downstream 339531 822467 ~ 876253 (+)
G172276 NA non-coding downstream 371014 853950 ~ 858287 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 203438 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 269319 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 371204 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 385182 29536 ~ 50591 (+)
LOC103038248 NA other downstream 96387 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 360852 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 900559 1383495 ~ 1544956 (+)
G172517 NA other downstream 1024384 1507320 ~ 1542151 (+)
G172552 NA other downstream 1143863 1626799 ~ 1628805 (+)

Expression


Co-expression Network