G172215 (ddx55)


Basic Information

Item Value
gene id G172215
gene name ddx55
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 504665 ~ 506092 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233154
TTCTTCTAGAAATTGTCCCATAACTTCACTGATCTGCACAGCCAGCTCTCGCGTCGGAGTGATGATCAAAGCACCGAcCTGCATTTTcttcagcttctcttcacgcttTAGAAGAATTTCCAGAACAGGAATCACAAACGCCAGAGTTTTCCCGCTTCCCGTCACCGCTTCAGCAGCAATGTCTTTATTACTCATAAACAGAGGGATGCAGGCGGACTGAACTGGGGTCATGAAGGTAAAGCCCAGTTTCTGGAGGGTCCGCTTTATCCCGTCCTGAAGATTCACAGATAAACTGTCCCATCTTCCCTCCGTCACGCGCTCCATCCTTTGATCTTCTTTTTAATACTAAACTATAAACTCACATGCTGTAAACACGCTCTGTGTGCAGCGCGGTCCGGGG

Function

symbol description
ddx55 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be active in nucleolus. Orthologous to human DDX55 (DEAD-box helicase 55).

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX55 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233154 True 400 lncRNA 0.48 4 504665 506092

Neighbor

gene id symbol gene type direction distance location
brap brap,LOC107706763,LOC107712082 coding upstream 33244 460448 ~ 471421 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding upstream 132675 352600 ~ 371990 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding upstream 165583 332022 ~ 339082 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding upstream 230395 244108 ~ 274270 (+)
LOC111194996 LOC108425217 coding upstream 287972 204171 ~ 216693 (+)
ptpn11 ptpn11,ptpn11a coding downstream 8145 514237 ~ 531825 (+)
LOC103038879 NA coding downstream 30201 536293 ~ 541770 (+)
LOC103038565 LOC108425201 coding downstream 37688 543780 ~ 575333 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding downstream 82795 588887 ~ 837920 (+)
LOC103021728 NA coding downstream 363439 869531 ~ 878891 (+)
G172198 NA non-coding upstream 16085 472033 ~ 488580 (+)
G172161 NA non-coding upstream 54649 298541 ~ 450016 (+)
G172169 NA non-coding upstream 87070 356043 ~ 417595 (+)
G172180 NA non-coding upstream 95686 408601 ~ 408979 (+)
G172172 pi4ka,LOC108425210,LOC101479673 non-coding upstream 112817 390736 ~ 391848 (+)
G172218 NA non-coding downstream 33608 539700 ~ 593909 (+)
G172266 NA non-coding downstream 258534 764626 ~ 822760 (+)
G172273 NA non-coding downstream 316375 822467 ~ 876253 (+)
G172276 NA non-coding downstream 347858 853950 ~ 858287 (+)
G172462 NA non-coding downstream 484542 990634 ~ 990838 (+)
LOC103039814 vdac2,LOC107704122 other upstream 21729 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 272330 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 338211 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 440096 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 454074 29536 ~ 50591 (+)
LOC103038248 NA other downstream 73231 579323 ~ 586198 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 337696 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 877403 1383495 ~ 1544956 (+)
G172517 NA other downstream 1001228 1507320 ~ 1542151 (+)
G172552 NA other downstream 1120707 1626799 ~ 1628805 (+)

Expression


Co-expression Network