G172218


Basic Information

Item Value
gene id G172218
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 539700 ~ 593909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233159
gattttgctatttataggtttatgtttgaataaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattacaaataaaaatattctcatttagagcatttatttacagaaaatgagaaatggctgaaataacaaaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaataatcaatatttgatggaataaccctggtggtttttaatctcagtttttttcatgcatcttggcatcatgttctcctcctccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233159 True 460 lncRNA 0.31 2 539700 593909

Neighbor

gene id symbol gene type direction distance location
ptpn11 ptpn11,ptpn11a coding upstream 7875 514237 ~ 531825 (+)
brap brap,LOC107706763,LOC107712082 coding upstream 68279 460448 ~ 471421 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding upstream 167710 352600 ~ 371990 (+)
LOC103024445 LOC108425213,LOC107665780,LOC107602239,LOC107548990,LOC107731619,LOC107751766,LOC107704148 coding upstream 200618 332022 ~ 339082 (+)
LOC103041052 zfyve16,LOC107751709,LOC107665785,LOC107602218 coding upstream 265430 244108 ~ 274270 (+)
LOC103021728 NA coding downstream 275622 869531 ~ 878891 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding downstream 470823 1064732 ~ 1089090 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding downstream 923453 1517362 ~ 1532769 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 1063197 1657106 ~ 1661821 (+)
snrnp35 snrnp35,LOC107658469 coding downstream 1069347 1663256 ~ 1666211 (+)
G172215 ddx55 non-coding upstream 33608 504665 ~ 506092 (+)
G172198 NA non-coding upstream 51120 472033 ~ 488580 (+)
G172169 NA non-coding upstream 122105 356043 ~ 417595 (+)
G172180 NA non-coding upstream 130721 408601 ~ 408979 (+)
G172172 pi4ka,LOC108425210,LOC101479673 non-coding upstream 147852 390736 ~ 391848 (+)
G172266 NA non-coding downstream 170717 764626 ~ 822760 (+)
G172273 NA non-coding downstream 228558 822467 ~ 876253 (+)
G172276 NA non-coding downstream 260041 853950 ~ 858287 (+)
G172462 NA non-coding downstream 396725 990634 ~ 990838 (+)
G172464 NA non-coding downstream 406199 1000108 ~ 1000519 (+)
LOC103039814 vdac2,LOC107704122 other upstream 56764 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 307365 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 373246 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 475131 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 489109 29536 ~ 50591 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 249879 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 789586 1383495 ~ 1544956 (+)
G172517 NA other downstream 913411 1507320 ~ 1542151 (+)
G172552 NA other downstream 1032890 1626799 ~ 1628805 (+)
LOC103041266 NA other downstream 1245442 1839351 ~ 1850216 (+)

Expression


Co-expression Network