LOC103038248


Basic Information

Item Value
gene id LOC103038248
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 579323 ~ 586198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233162
AGGACTGTATGTGAACACTGATATGTGCTGTCGGGAGCACGACCACTGTAAAGACTCCATCACTTCCTTCGGGTTCAACTATGGAGTCCTCAACACCAACATCTTCACCCTTTCACACTGCGACTGTGATAAGAAGTTCCAGCAGTGTCTTCATAAAGCCAACGACAGCATGGCCAACGTGGTGGGATACGGATACTTCAACGTCCTCAAGATGCGCTGCTTCGAATTCGCAGAGAGGATGGAGTGTGCTGAG
>TU233164
CAAAACCAACAGACTCAAAACCAACAGAATCAACACCAACAAAACCAACAGACACAAAACCAACAGAATCAACACCAACAAAATCAACAGACTTAAAACCAACAGACTCAAATCCAACAGAATCAACACAGGCAAAACCAACACAGACCTCAAGTTTGCCGAAGACGCAGCCTGATCTACAGAGCAGAGATAAAGGTAAAGTTTCCACATGTGAGAGTTATAAGGACCTGGACTCCTGCCGCCTTCAGATCCCTGGAAAGCAGGAGAAGTTCGGTCTGAGGAACGCTGAATTCGCCACCCTGTACCACTGCAACTGTACCGCCAGACTCTCCAACCAATTCTCTGGACTGGACCGGGTCGATGATGTTCATTTCTTCCTGCTGGACTTCGTGTCCCAGTTCTGTTTCATCATGCCCCCGAACTGCACCGACAGTGACAGCTGCTCTTCTAAAGATCCTCCTGTGATCAGACGCTGGACCAAAGACGTGGCCGGAGGGCGCCCTCTTGTGGCCTCGAAACGTAAAGCCAAGCGCCTCAACTCCAAAAGATCCAAGAGGAAGGACTCCTTCAGACTGTATAAGAAGTGCCTCAGGATGCACTCCAAACTGCAGAGACCCAAAGAACCAACTGATCACAAACTCCAGAACCCTTCAGGACATGCAGaaccaataaaacaataaacataccTGTCCTGAAAAACTTCCACCATGCTCAGACTGTCCTGAACACCTTCCACCATGCTCAGACTGTCCTGAACGTCTTCCACCATGCTCAGACTGTCCTGAAC
>XM_022681513.1
tatctatctataacgTATGGATTACCAGTTGGGCTGCCATTCAGGCTGCACATGGGCACACATTGGATTCTGATCTCGGAGTTAGTGAGGCTCTTGACTTTCCAATCAGGTAATCTGACTTGTTACAGGACCTTACAGTAAAAAATTACTGGTTGGAACTCAGAAATTCCAAAATTTGAGttgaatgtattattaaaatagtattaaacattaattaccaagtACAAACCAAGGCAACATGTTTAGGTGGTGCTCACATTGATGGAACATGGTTAAAATTGGTACCAGACGGGCATCATGGGCTTTGAGTAGTTCTGTGTATGAATTAGGAATCACCAACATGAATATTTGTGGCTGAAATCACAACTGAACACAATGAAATGTTCGGCTAAATGTTCATGCTAAATAAAACCCTAAcattagaggaaacactgctAAATTATTTCACATAAATGAGTCATTGTTCTGTATAACTGCTTTAGTATTTTCACTTGTTCTTTGCACATATATAGAACaagtaaaaaattaataatatttgttgCATCCCTTGTAATGTCCACATACATTTGGATctacagtatattgtgatattgtgtaTACTCAAGTTCAACCTTGACATGGTTTTAGCCCCAAGGAGTCCGTTCCTACTGGCCGGCCTGATCACGCTTTTATTTAGCCTGGAGTTTGAATCTTGTCTTGCTGTCACATCACGTCATATCATGCAGGGAGATAAGGTGATGGATAAAGCGTGATAGCGGCTATGATAATGATAACTACTGCATCCATAAATGTTTGATGTATTGCTCTGTGGATGTCCGCTGGCTAAGGCTGGCCGGTCTGCCTTCCACAGCtgatcctaaataaataaacctaccCCCCGCCCCCCGGCCAACCACTAACAGCACGCCTATTGCCATGCTGTGTGTTAGTTGGGTCAGCTGGACATCCTGATGTTGACTCAAGTCCACATGGGAAGGGAAGTCCCCATGCAGGGCATCATATAAAGGAGGTAGGGTGAAGTGGCCATAGCAGATCCATAGCTAGAAAAAAGGTGGTAGGTGAAGTCTGTAGCTCTGTTTGGGATACTTCACTGATGTTACTCATTTAATTCATGCATTCTCTTTGATTTATTTGGAACTATCCCAACTAAGAACCTCAACCTTTGGAAATTGAGGTcttttctagattttttttctaaagaaaatGAACGCTTGTGGCCTTTTCCAGGCTGCAGTTTGCCTTgtcttacttttacttaatttttccGCCGCTACCCATTTCCAAACTCAACCctcaaacagcagcagcactttCTGCTTCTGGACTAAATCCATCTCCAATGGACGCACAAGTTACATGTTCCTGCACCGAACCAGCAGGTCCGGCGAGACATCTCTCGTCCTATTTGACAGCATCTGGACCAAGGACAACACCCTGGTGGACTGTGTTACAAGCTCCAACCAAGTTGTTACCAAAAGCTACGTGTCACAGTGCTGGGAGCCTGGAGCCACAATTTTTTCCCGAATTCCAGACGAACGCTTCAACGTCAGCAAGCTGGTTGACCCCGCTGGCCCCTGCGAGGGCACCGTGGGTCGCTTGGCACATCCTAGGCAGTCGGTTCGCCGCAGGAGCAGAGACCTGGAGAGCGTTGACCGGCAGGATGGGGAGACGCTGAGTGGAGAAAGTTCTGGACAGAAGTCGAGGCGCTCGAAGAGAGCGTGGATCGTCCCAGGAACTCTGTGGTGCGGCGCCGGACACTCGGCCCTCGACTTTACCGAATTAGGACTGTATGTGAACACTGATATGTGCTGTCGGGAGCACGACCACTGTAAAGACTCCATCACTTCCTTCGGGTTCAACTATGGAGTCCTCAACACCAACATCTTCACCCTTTCACACTGCGACTGTGATAAGAAGTTCCAGCAGTGTCTTCATAAAGCCAACGACAGCATGGCCAACGTGGTGGGATACGGATACTTCAACGTCCTCAAGATGCGCTGCTTCGAATTCGCAGAGAGGATGGAGTGTGCTGAGAGGACCTGGTGGGGCATGTGTAAATTCCACCAGATGGCTAAATACGCTTTGGTAAGGGATGCTACATATTACAATTCCACATCCCCTGAGTTAGAGGAGGAAACGAGCGCTGTTTACACAACGTCTGCTGGACAACCGACAGCCACTCCTGGTTCAACTGTGCCATCTACTCTACCCACTGAAGATCCCCGGGCAGACCGAGAGCATCCTGAAACAACTGACTCGCAACAGACAAATCCAACAGACACAACACCAACAAAACCAACAGACACTAAAGACACAAAATCAACACCAACAAAACCAACAGACACAAAACCAACAGAATCAACACCAACAAAATCAACAGACTTAAAACCAACAGACTCAAATCCAACAGAATCAACACAGGCAAAACCAACACAGACCTCAAGTTTGCCGAAGACGCAGCCTGATCTACAGAGCAGAGATAAAGGTAAAGTTTCCACATGTGAGAGTTATAAGGACCTGGACTCCTGCCGCCTTCAGATCCCTGGAAAGCAGGAGAAGTTCGGTCTGAGGAACGCTGAATTCGCCACCCTGTACCACTGCAACTGTACCGCCAGACTCTCCAACCAATTCTCTGGACTGGACCGGGTCGATGATGTTCATTTCTTCCTGCTGGACTTCGTGTCCCAGTTCTGTTTCATCATGCCCCCGAACTGCACCGACAGTGACAGCTGCTCTTCTAAAGATCCTCCTGTGATCAGACGCTGGACCAAAGACGTGGCCGGAGGGCGCCCTCTTGTGGCCTCGAAACGTAAAGCCAAGCGCCTCAACTCCAAAAGATCCAAGAGGAAGGACTCCTTCAGACTGTATAAGAAGTGCCTCAGGATGCACTCCAAACTGCAGAGACCCAAAGAACCAACTGATCACAAACTCCAGAACCCTTCAGGACATGCAGaaccaataaaacaataaacataccTGTCCTGAAAAACTTCCACCATGCTCAGACTGTCCTGAACACCTTCCACCATGCTCAGACTGTCCTGAACGTCTTCCACCATGCTCAGACTGTCCTGAACACCTTCCACCATGCTCAGACTGTCATGAACACCTTTCACCATGCTCAGACTGTCCTGAACACCTTCCACCATGCTCAGACTGTCCTGAACACCTTTCACCATGCTCAGACTGTCCTGAACACCTTTCACCATGCTCAGACTGTCCTGAACACCTTCCACCATGCTCAGACTGTCCT

Function

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
TU233162 False 253 TUCP 0.50 2 581730 582805
TU233164 False 787 TUCP 0.49 4 584367 586022
XM_022681513.1 True 3253 mRNA 0.47 9 579323 586198

Neighbor

gene id symbol gene type direction distance location
LOC103038565 LOC108425201 coding upstream 3990 543780 ~ 575333 (+)
LOC103038879 NA coding upstream 37553 536293 ~ 541770 (+)
ptpn11 ptpn11,ptpn11a coding upstream 47498 514237 ~ 531825 (+)
brap brap,LOC107706763,LOC107712082 coding upstream 107902 460448 ~ 471421 (+)
hic2 hic2,LOC107665789,LOC107704150,LOC107548988,LOC107602240 coding upstream 207333 352600 ~ 371990 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding downstream 2689 588887 ~ 837920 (+)
LOC103021728 NA coding downstream 283333 869531 ~ 878891 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding downstream 478534 1064732 ~ 1089090 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding downstream 931164 1517362 ~ 1532769 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 1070908 1657106 ~ 1661821 (+)
G172215 ddx55 non-coding upstream 73231 504665 ~ 506092 (+)
G172198 NA non-coding upstream 90743 472033 ~ 488580 (+)
G172161 NA non-coding upstream 129307 298541 ~ 450016 (+)
G172169 NA non-coding upstream 161728 356043 ~ 417595 (+)
G172180 NA non-coding upstream 170344 408601 ~ 408979 (+)
G172266 NA non-coding downstream 178428 764626 ~ 822760 (+)
G172273 NA non-coding downstream 236269 822467 ~ 876253 (+)
G172276 NA non-coding downstream 267752 853950 ~ 858287 (+)
G172462 NA non-coding downstream 404436 990634 ~ 990838 (+)
G172464 NA non-coding downstream 413910 1000108 ~ 1000519 (+)
LOC103039814 vdac2,LOC107704122 other upstream 96387 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 346988 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 412869 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 514754 63363 ~ 64569 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other upstream 528732 29536 ~ 50591 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other downstream 257590 843788 ~ 866376 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 797297 1383495 ~ 1544956 (+)
G172517 NA other downstream 921122 1507320 ~ 1542151 (+)
G172552 NA other downstream 1040601 1626799 ~ 1628805 (+)
LOC103041266 NA other downstream 1253153 1839351 ~ 1850216 (+)

Expression


Co-expression Network