LOC111194999 (pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151)


Basic Information

Item Value
gene id LOC111194999
gene name pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 843788 ~ 866376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233211
TCGGGCGGAGAGAAGATGGTGCTCATCAAGGAGTATCGCGTGGTCTTGCCGTGCTCAGTAGAAGAGTACCAAGTGGGGCAGCTTTTCTCCGTGGCTGAGGCCAGCAAGAATGAGACGGGAGGAGGAGAAGGGATCGAAGTGCTGACGAATGAACCGTACGAGAAGGAGGGGGAGAAAggacaatacacacacaaaatataccACTTAAAGAGTAAAGTGCCCGGCTTTGTGAAGATGATCGCACCAGAGGGAGCTCTAGTATTCCATGAAAAGGCCTGGAATGCATATCCATACTGTTGTACCAgtaagtttaatgt
>XM_022680775.1
CCAGCGCCGCCGTCGGATAGCGAGGTGACGTCGGCACCGCCGCGCAGCCGCAGTCGGGCGGAGAGAAGATGGTGCTCATCAAGGAGTATCGCGTGGTCTTGCCGTGCTCAGTAGAAGAGTACCAAGTGGGGCAGCTTTTCTCCGTGGCTGAGGCCAGCAAGAATGAGACGGGAGGAGGAGAAGGGATCGAAGTGCTGACGAATGAACCGTACGAGAAGGAGGGGGAGAAAggacaatacacacacaaaatataccACTTAAAGAGTAAAGTGCCCGGCTTTGTGAAGATGATCGCACCAGAGGGAGCTCTAGTATTCCATGAAAAGGCCTGGAATGCATATCCATACTGTTGTACCATTGTGACGAATGAATACATGAAAGACGACTTCATGATCAAAATTGAAACGTGGCACAAACCGGACATGGGCTCTTTGGAAAATGTGCATGACTTGGACCCGGAGACGTGGAAGACTGTGGAGGTTGTACCCATTGATATAGCAGACAGATCACAAGTGGAGCCTGGAGACTATAAGCAAGAAGAAGACCCTGCGGTTTTTCACTCAGAGAAAACAGGTCGAGGTCCACTGGGCCCAGAATGGAAGTCAGAGCTCGCTGCAAATGAAAACGCTCCCCGAATGTGTGCATACAAACTCGTCACGGTGAAGTTCAAGTGGTGGGGCCTTCAAAGCAAAATAGAGCATTTCATCCATAAACAAGAGAAAAGAATCTTCACCAACTTCCATCGTCAGCTCTTCTGCTGGATGGACAGCTGGGTGGGACTCACCATGGAGGACATCCGGCGGATGGAGGCTGAAACACAGAAGGAGCTAGAAGAGCTTCGTAAAACTGGTCAGGTTCGAGGTACCAGTGCTGCTCACGAGCAATGAGGCAAAACTAAAGGATCCTACGGTAATATTCTGACATTCGGGCGGAAAAAGCGAAGAATGAAGCGACGGTCAGCGCGACGTGCACCGCGGTTCAGTCCTCCACCAGCCTGAGGGACGTCCCCACTCTTCATTATTACTGTACCAGGCCAGCGTTCCTCCCGCTCACCATCTTTCACTATTTCACCATGGTCCTCAGCCTCGTACTGGCTCTCTCACCACTATATCACCATTATACAGAGTTTGCCTTCAGTGGCGTTAGAGGAGAACGGTAGAAAACTGTGTGCTTTTGAGTAGGACTTTGCGATTTTGTAGAAAATTTCAAAGTTTGTGATGAAATTGGTTTTAATTTCAGGCAGGCAGGCGCTGGAGGACCAATTGTTGTAATTGTGTGGTTTAGtcatttcactttttaaaaattgtggTTTTCTTTCACACCGGTTACTTCTTATTCTCACCAGTTTTaaaggctgtgttcagactgcaggcagaTCGGATTTCTGCATTGTTATTTGTAAGCGATCAGATtgatcagattggatttgcATGTCTTGACATCACAATCACTTTGGATTTGATgagtttttaaagtaaaatatgttaaaatctTTGAGTATAAGACTGACCTACATCAAATATTTggatttaaatgttgttttggaTCGGATtttgcaaaaatctgatttcatgtCATTTCTGGCTGTTTAGACTCTCCAAAAAAACAGTCTGTATTCATTCTAGATCAGATTCAGGCTGGCAGTCTAAATAAGTAATCAGATTGGATTTGCCTGTCTGGACATCACAAACAAATCTGAAAAACTAACCTGTGGCTTCTGGCTGTTtagattatcaaaaaaatcaatctggatttGATTTAGATCAGATTTACTAAtgatcagattggatttgcATGTCTGGACATGACAAATGTATCTGCTTAACCAACCTTTGGCACTGTTCTTGGACCCCTGCATTCTGGATTTAATGAGGTCATACGCTTAAATCTGGTTCTGAGCGTCTAGACTGATACACGCGTGTAAACATCtgatttcatgtggtttctTTCGGCAGTAcacactgtcaaaaaaaaaaactggattcaatgtagattaaaaaaaaaaattagattcatgctggcagtctgaacacagcctaaGTCTCTACCCCCTTTACCCCACTTTTAATTAAGCAAATCCCTGGTTAAGCACTTACATCAGATTAATTATAATTGTAATGTTCATATCTCttgtttattgtaattataatattcacggttattcgttttttttgttcgttttttttttagtttattaccaTTTAACTGTAGtagttttgcctttttttctcatctcatctttttttttgtctgatctAGAAAATGTTGCGTACGCTGTTGCATGGAGGAAAAACTTTCAGCTGCAAAAAAAATTCagatgcaaaaatttaagcacaCGCAAACGATCGCCCGATTTAAcgtcaatcaatcaatatatcAATCGATAAGTCAATCACGTGCTGTTAAATAATGTCGTATCGGGAGAACCACAGGACCTCGTTTGGATTTGCATGAGCTCAGCGATGGCGAGACAGTGCGGGTGATGTTCtttatctttgtttttattctcttgttcttattttttgtttcgtTTTTGTCGTTTGGTTTTGTTTATGGTTTTGTTTTAAATCGACCGGAGGTCCCCTAGTTTTTAAGGGACCCTCCGCGCTCAGCTCTGGGCTGGGTGTAGACTCAGGCAGCGCCCGGTATCAGGAACACCGTTCCCTTCTGaggtttagagtttagattttagattttaaagttTAGGCTTTCGATGCAATCACTGCTGCTGTTCTATAGTGCTCTTAGGGCTAGTGCTGTGCTGCTAGATCTcgaatgtacacacacacacacacacacatactgtataaacaaatttatatttatacatatatataaataaaaatgcatgaatGAACAGCAGACCAATCAGATTGTAAAATAAAGTTCTACAAtgaagaactttaaaaactgtaaaatccagcaaaaacaccttttttataacAAAGATATAAATGTCAGatttagggatgcactgaatatttggcgaattaaatattagttttattaatgttcaggctaataaaatgtaaaatgagagTTTATATCGAACAATAACTTATCTTATTTATCTGCAAGATTGAACAGCAGGCCAATCAGattgtagatttttagattgTATAATTTGAAACATCGAATAAAAAtcaaagcaatttttttttttttgccaagatCTTTGAGAAGATTtggagctgcaactaatgattattttcaaagtcaaatattcggattatttgttaaattagtcgattagtcaacgattatttctatCGAGAATTTCATAAACAGGTGGatgtgggatttaaatgccctttaaatGACAAGACGGTATCATTTAAATGTGAGAAcatgtggaaagtactgatatttagtgggtaaatatgtaatctgttgtgttttgccACTTTTGAAAACTTTGAGGTTTTTAGAATCAAtcttgtcgattatatcgactaatcttTGCAGCCCTACTGACTATTATACtggctttattttattgtttgaagCTTAATTTCATTACTTTATTGGTCTTCTGGGGTGTTAAAATGTACCCAGCGTCCAATAATTGTTTTCAAATTATAGTTTTGTAATTacttttcctttaaaaataaaacaagcgagacaaaaatattttaacatttaagctattttaaaatgaagaaaaaacaaaaattgaatTCGGACAAAATGATagtttcagtgcatccctaataaGATTGTATGTTGAATGTTGATACTTCAGACGGTGATTAAAGATCATTTGATTGAAAAGGACTTCACCTCTGCAGGAGTCCTACATCTATATCtacatatatttactatatggccaaatgtttgtggacacccataGCCAATCAGATTAGCCCCAAAGGTCCTGGATTTATCTCCAGTCATATTTAGACCAGACTCCCATCTCTATGAATCGTGGGTCatagaggggtataaaccccAGTACTGATCTGTGGAGCAGaggaggaactgtgttctctggattaATGGAGCTCCATAATCCAATCCTGACCTCCTGACATGAATTTATTAAacgctaaatgcaatcaaatctcttaatttcaggagaaacagtgAAATGAgttggtgtcccaatacttttgtccatatagtgtttcTTCACCAGCCTCCCATCAACCAGCCTagcaaaaatgaaataaataaaataaattaataaatacattaattaaaacaaacctAGAATCATGCTCCTTTGCACTGTTCACACGGGAGACTTTTAAACTCGACAGGGCTGAAATATTGAGCTGTGTTTGAGGTTCTTGTAGTTGACGCTGtaagtggtgtagtgtgtgtttatatagggGAGGGCGATATGATAAAGgcatttttatgatttaaaatacTTACAGTGATGAATTGCGtgacttctgacaccaatctttacatctgAACTAATCACTGAGTTTCTGAAAATCGATATAATATTGCAAAACCAAATATCGCAATACGATACAATATCAATAACCATGATTCCCTCAGGAAAAGATGTCTGTTTTCAAtcgaaataacaaaataaataatctaatctaata
>XM_022680776.1
CAGCGCCGCCGTCGGATAGCGAGGTGACGTCGGCACCGCCGCGCAGCCGCAGTCGGGCGGAGAGAAGATGGTGCTCATCAAGGAGTATCGCGTGGTCTTGCCGTGCTCAGTAGAAGAGTACCAAGTGGGGCAGCTTTTCTCCGTGGCTGAGGCCAGCAAGAATGAGACGGGAGGAGGAGAAGGGATCGAAGTGCTGACGAATGAACCGTACGAGAAGGAGGGGGAGAAAggacaatacacacacaaaatataccACTTAAAGAGTAAAGTGCCCGGCTTTGTGAAGATGATCGCACCAGAGGGAGCTCTAGTATTCCATGAAAAGGCCTGGAATGCATATCCATACTGTTGTACCATTGTGACGAATGAATACATGAAAGACGACTTCATGATCAAAATTGAAACGTGGCACAAACCGGACATGGGCTCTTTGGAAAATGTGCATGACTTGGACCCGGAGACGTGGAAGACTGTGGAGGTTGTACCCATTGATATAGCAGACAGATCACAAGTGGAGCCTGGAGACTATAAGCAAGAAGAAGACCCTGCGGTTTTTCACTCAGAGAAAACAGGTCGAGGTCCACTGGGCCCAGAATGGAAGTCAGAGCTCGCTGCAAATGAAAACGCTCCCCGAATGTGTGCATACAAACTCGTCACGGTGAAGTTCAAGTGGTGGGGCCTTCAAAGCAAAATAGAGCATTTCATCCATAAACAAGAGAAAAGAATCTTCACCAACTTCCATCGTCAGCTCTTCTGCTGGATGGACAGCTGGGTGGGACTCACCATGGAGGACATCCGGCGGATGGAGGCTGAAACACAGAAGGAGCTAGAAGAGATGCGTAGCAGTGGCACAGTAAGAGGCACGACGGCAGCAGAGGAGTAGCTGTGGATTTCTAGTAGCTCTACAGGTGGAGTGAGATCCCTTCGTAAAACTGGTCAGGTTCGAGGTACCAGTGCTGCTCACGAGCAATGAGGCAAAACTAAAGGATCCTACGGTAATATTCTGACATTCGGGCGGAAAAAGCGAAGAATGAAGCGACGGTCAGCGCGACGTGCACCGCGGTTCAGTCCTCCACCAGCCTGAGGGACGTCCCCACTCTTCATTATTACTGTACCAGGCCAGCGTTCCTCCCGCTCACCATCTTTCACTATTTCACCATGGTCCTCAGCCTCGTACTGGCTCTCTCACCACTATATCACCATTATACAGAGTTTGCCTTCAGTGGCGTTAGAGGAGAACGGTAGAAAACTGTGTGCTTTTGAGTAGGACTTTGCGATTTTGTAGAAAATTTCAAAGTTTGTGATGAAATTGGTTTTAATTTCAGGCAGGCAGGCGCTGGAGGACCAATTGTTGTAATTGTGTGGTTTAGtcatttcactttttaaaaattgtggTTTTCTTTCACACCGGTTACTTCTTATTCTCACCAGTTTTaaaggctgtgttcagactgcaggcagaTCGGATTTCTGCATTGTTATTTGTAAGCGATCAGATtgatcagattggatttgcATGTCTTGACATCACAATCACTTTGGATTTGATgagtttttaaagtaaaatatgttaaaatctTTGAGTATAAGACTGACCTACATCAAATATTTggatttaaatgttgttttggaTCGGATtttgcaaaaatctgatttcatgtCATTTCTGGCTGTTTAGACTCTCCAAAAAAACAGTCTGTATTCATTCTAGATCAGATTCAGGCTGGCAGTCTAAATAAGTAATCAGATTGGATTTGCCTGTCTGGACATCACAAACAAATCTGAAAAACTAACCTGTGGCTTCTGGCTGTTtagattatcaaaaaaatcaatctggatttGATTTAGATCAGATTTACTAAtgatcagattggatttgcATGTCTGGACATGACAAATGTATCTGCTTAACCAACCTTTGGCACTGTTCTTGGACCCCTGCATTCTGGATTTAATGAGGTCATACGCTTAAATCTGGTTCTGAGCGTCTAGACTGATACACGCGTGTAAACATCtgatttcatgtggtttctTTCGGCAGTAcacactgtcaaaaaaaaaaactggattcaatgtagattaaaaaaaaaaattagattcatgctggcagtctgaacacagcctaaGTCTCTACCCCCTTTACCCCACTTTTAATTAAGCAAATCCCTGGTTAAGCACTTACATCAGATTAATTATAATTGTAATGTTCATATCTCttgtttattgtaattataatattcacggttattcgttttttttgttcgttttttttttagtttattaccaTTTAACTGTAGtagttttgcctttttttctcatctcatctttttttttgtctgatctAGAAAATGTTGCGTACGCTGTTGCATGGAGGAAAAACTTTCAGCTGCAAAAAAAATTCagatgcaaaaatttaagcacaCGCAAACGATCGCCCGATTTAAcgtcaatcaatcaatatatcAATCGATAAGTCAATCACGTGCTGTTAAATAATGTCGTATCGGGAGAACCACAGGACCTCGTTTGGATTTGCATGAGCTCAGCGATGGCGAGACAGTGCGGGTGATGTTCtttatctttgtttttattctcttgttcttattttttgtttcgtTTTTGTCGTTTGGTTTTGTTTATGGTTTTGTTTTAAATCGACCGGAGGTCCCCTAGTTTTTAAGGGACCCTCCGCGCTCAGCTCTGGGCTGGGTGTAGACTCAGGCAGCGCCCGGTATCAGGAACACCGTTCCCTTCTGaggtttagagtttagattttagattttaaagttTAGGCTTTCGATGCAATCACTGCTGCTGTTCTATAGTGCTCTTAGGGCTAGTGCTGTGCTGCTAGATCTcgaatgtacacacacacacacacacacatactgtataaacaaatttatatttatacatatatataaataaaaatgcatgaatGAACAGCAGACCAATCAGATTGTAAAATAAAGTTCTACAAtgaagaactttaaaaactgtaaaatccagcaaaaacaccttttttataacAAAGATATAAATGTCAGatttagggatgcactgaatatttggcgaattaaatattagttttattaatgttcaggctaataaaatgtaaaatgagagTTTATATCGAACAATAACTTATCTTATTTATCTGCAAGATTGAACAGCAGGCCAATCAGattgtagatttttagattgTATAATTTGAAACATCGAATAAAAAtcaaagcaatttttttttttttgccaagatCTTTGAGAAGATTtggagctgcaactaatgattattttcaaagtcaaatattcggattatttgttaaattagtcgattagtcaacgattatttctatCGAGAATTTCATAAACAGGTGGatgtgggatttaaatgccctttaaatGACAAGACGGTATCATTTAAATGTGAGAAcatgtggaaagtactgatatttagtgggtaaatatgtaatctgttgtgttttgccACTTTTGAAAACTTTGAGGTTTTTAGAATCAAtcttgtcgattatatcgactaatcttTGCAGCCCTACTGACTATTATACtggctttattttattgtttgaagCTTAATTTCATTACTTTATTGGTCTTCTGGGGTGTTAAAATGTACCCAGCGTCCAATAATTGTTTTCAAATTATAGTTTTGTAATTacttttcctttaaaaataaaacaagcgagacaaaaatattttaacatttaagctattttaaaatgaagaaaaaacaaaaattgaatTCGGACAAAATGATagtttcagtgcatccctaataaGATTGTATGTTGAATGTTGATACTTCAGACGGTGATTAAAGATCATTTGATTGAAAAGGACTTCACCTCTGCAGGAGTCCTACATCTATATCtacatatatttactatatggccaaatgtttgtggacacccataGCCAATCAGATTAGCCCCAAAGGTCCTGGATTTATCTCCAGTCATATTTAGACCAGACTCCCATCTCTATGAATCGTGGGTCatagaggggtataaaccccAGTACTGATCTGTGGAGCAGaggaggaactgtgttctctggattaATGGAGCTCCATAATCCAATCCTGACCTCCTGACATGAATTTATTAAacgctaaatgcaatcaaatctcttaatttcaggagaaacagtgAAATGAgttggtgtcccaatacttttgtccatatagtgtttcTTCACCAGCCTCCCATCAACCAGCCTagcaaaaatgaaataaataaaataaattaataaatacattaattaaaacaaacctAGAATCATGCTCCTTTGCACTGTTCACACGGGAGACTTTTAAACTCGACAGGGCTGAAATATTGAGCTGTGTTTGAGGTTCTTGTAGTTGACGCTGtaagtggtgtagtgtgtgtttatatagggGAGGGCGATATGATAAAGgcatttttatgatttaaaatacTTACAGTGATGAATTGCGtgacttctgacaccaatctttacatctgAACTAATCACTGAGTTTCTGAAAATCGATATAATATTGCAAAACCAAATATCGCAATACGATACAATATCAATAACCATGATTCCCTCAGGAAAAGATGTCTGTTTTCAAtcgaaataacaaaataaataatctaatctaata

Function

symbol description
pitpnb Enables phosphatidylcholine transporter activity and phosphatidylinositol transfer activity. Acts upstream of or within photoreceptor cell outer segment organization. Located in trans-Golgi network. Is expressed in eye; retinal cone cell; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human PITPNB (phosphatidylinositol transfer protein beta).

NR:

description
PREDICTED: phosphatidylinositol transfer protein beta isoform-like isoform X2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0015914 phospholipid transport biological_process
GO:0015695 organic cation transport biological_process
GO:0015697 quaternary ammonium group transport biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233211 False 317 TUCP 0.50 4 843841 850815
XM_022680775.1 False 4562 mRNA 0.39 11 843788 866376
XM_022680776.1 True 4648 mRNA 0.39 12 843789 866376

Neighbor

gene id symbol gene type direction distance location
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding upstream 5868 588887 ~ 837920 (+)
LOC103038565 LOC108425201 coding upstream 268455 543780 ~ 575333 (+)
LOC103038879 NA coding upstream 302018 536293 ~ 541770 (+)
ptpn11 ptpn11,ptpn11a coding upstream 311963 514237 ~ 531825 (+)
brap brap,LOC107706763,LOC107712082 coding upstream 372367 460448 ~ 471421 (+)
LOC103021728 NA coding downstream 3155 869531 ~ 878891 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding downstream 198356 1064732 ~ 1089090 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding downstream 650986 1517362 ~ 1532769 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 790730 1657106 ~ 1661821 (+)
snrnp35 snrnp35,LOC107658469 coding downstream 796880 1663256 ~ 1666211 (+)
G172266 NA non-coding upstream 21028 764626 ~ 822760 (+)
G172218 NA non-coding upstream 249879 539700 ~ 593909 (+)
G172215 ddx55 non-coding upstream 337696 504665 ~ 506092 (+)
G172198 NA non-coding upstream 355208 472033 ~ 488580 (+)
G172169 NA non-coding upstream 426193 356043 ~ 417595 (+)
G172462 NA non-coding downstream 124258 990634 ~ 990838 (+)
G172464 NA non-coding downstream 133732 1000108 ~ 1000519 (+)
G172480 NA non-coding downstream 177768 1044144 ~ 1104975 (+)
G172469 NA non-coding downstream 224976 1091352 ~ 1094665 (+)
G172503 NA non-coding downstream 459977 1326353 ~ 1326577 (+)
LOC103038248 NA other upstream 257590 579323 ~ 586198 (+)
LOC103039814 vdac2,LOC107704122 other upstream 360852 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 611453 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 677334 70622 ~ 166454 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other upstream 779219 63363 ~ 64569 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 517119 1383495 ~ 1544956 (+)
G172517 NA other downstream 640944 1507320 ~ 1542151 (+)
G172552 NA other downstream 760423 1626799 ~ 1628805 (+)
LOC103041266 NA other downstream 972975 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 986906 1853282 ~ 1855754 (+)

Expression


Co-expression Network