G172480


Basic Information

Item Value
gene id G172480
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1044144 ~ 1104975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233511
AACTTTGCCCCTGCAGTAGCACCTGCCCGTGCTGGAGTCGGAGATGATCCGCGACATCTCCTGCGGAGCGGCGTCCTCCGGCTTCCCGCGCCGGGGCTCCGGTGCCCGGCTGTGGGGCCCGCTGGCGgggggctgctgctgctgctgctgggtgaTAGTCCTGAGTATGTCCATGCTCGCTCTCTCgcgctctgtctgtctctcagtctATttctatctatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233511 True 223 lncRNA 0.65 2 1044144 1104975

Neighbor

gene id symbol gene type direction distance location
LOC103021728 NA coding upstream 165253 869531 ~ 878891 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding upstream 206224 588887 ~ 837920 (+)
LOC103038565 LOC108425201 coding upstream 468811 543780 ~ 575333 (+)
LOC103038879 NA coding upstream 502374 536293 ~ 541770 (+)
ptpn11 ptpn11,ptpn11a coding upstream 512319 514237 ~ 531825 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding downstream 412387 1517362 ~ 1532769 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 552131 1657106 ~ 1661821 (+)
snrnp35 snrnp35,LOC107658469 coding downstream 558281 1663256 ~ 1666211 (+)
denr denr,LOC107722339,LOC107706783 coding downstream 599529 1704504 ~ 1709183 (+)
LOC103044833 LOC108410534,LOC108276727 coding downstream 604430 1709405 ~ 1712925 (+)
G172464 NA non-coding upstream 43625 1000108 ~ 1000519 (+)
G172462 NA non-coding upstream 53306 990634 ~ 990838 (+)
G172273 NA non-coding upstream 167891 822467 ~ 876253 (+)
G172276 NA non-coding upstream 185857 853950 ~ 858287 (+)
G172266 NA non-coding upstream 221384 764626 ~ 822760 (+)
G172503 NA non-coding downstream 221378 1326353 ~ 1326577 (+)
G172513 NA non-coding downstream 251820 1356795 ~ 1431883 (+)
G172519 NA non-coding downstream 282045 1387020 ~ 1389097 (+)
G172520 NA non-coding downstream 296823 1401798 ~ 1403116 (+)
G172521 NA non-coding downstream 318631 1423606 ~ 1425440 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 177768 843788 ~ 866376 (+)
LOC103038248 NA other upstream 457946 579323 ~ 586198 (+)
LOC103039814 vdac2,LOC107704122 other upstream 561208 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 811809 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 877690 70622 ~ 166454 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other downstream 278520 1383495 ~ 1544956 (+)
G172517 NA other downstream 402345 1507320 ~ 1542151 (+)
G172552 NA other downstream 521824 1626799 ~ 1628805 (+)
LOC103041266 NA other downstream 734376 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 748307 1853282 ~ 1855754 (+)

Expression


Co-expression Network