G172517


Basic Information

Item Value
gene id G172517
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1507320 ~ 1542151 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233563
atattatatagatgtattacgctcagagtgatctattttaagcgtttatttaagtcttttattgttgatgattacggattacagccaatgaaaagccaaaaatcagtgtctcagaaaattagaatattatataaataaaccaaGGTACAgctaaaacagttaaaaaaataagcaagaAAATAAATTTGTGTTTTAGAATTTGGCCTTTAGTTTGGAAATGCTGGTTATAGGGCTCATTCCTAATAATACTTTAAACTGGTTTTGAGGCGCACCAGCTTGAagtttcccattatatatatatatatctactagagacagattatatctgttcagtatcatttattttactttaatctgataaaattcttgtattttttaatatctcagttaggggtgtgccatatcaaattgtatacaataataaaatgtattttttattttgttacagtagtgtattttttttaattcagtgttttgtcctATCAGCAAAAGTTGTATCACCTGGAGAACCAGAAGCTCCTCCCACAAATTCATGTTCCTCACAAATGtggcttttttttataagagAAATTACAGGCTTTCTAACAatataaaatttatacataaaataagttacaaaacataaatttccttgtatttttttttgctctgttttaGCTGTTTGAGTTGtatctctgtggtggttttctatccTGTATATCTACCCTGAAtactgaagaacagggtgattaaggaggagaataataaaaaaaagtttacagagaaacacataaaaaactacaatctgtaattattatataattatacaacTACATATCCTACATGCTAGAGAGGTAATAAGATGTACAATGGAGGATTAATgactaatatatgtttttaaacatatatatgtatatatatataaaatatgctcttaaaatatatacacaaccAGCTCGAATACTCAGCAGTAGTACAATACAAATGAAACATTGGAAACAGCCTgtgaaatgtttttcattttttcacttCCTATGCTCCGCCTAtttttggcacgtttttcttaCGTCTcgtaattttatatattttttctcgtTAATCCCGTCGCCTGAGACGTGCGCTACTTAAACCCTGCCATAACTGAACATCAGGTATCATGCACTACAAGATAACAGGATGTAGCAACATGAGAGGATGGTAACAAGGTTCTCCACTATTGACTAGTGCAAAAATTACAATGAGGTTATACAGTTGAGTAACTACAGCTTCCgaaaaactacaaaacaaaaaaacaaaaagaagaagaagaagaaatgcttTTGGCCATTGGTTTGGATCAAGTGTCTCCAGTTGtttatatattctatttatACTCTGTTGTGATTTCCCACCCCGACTTCCATTCCTCAATCCCTCCTTtcctttatccatccatccatccatccatccatccatccatccatctgtccatctgtgtgtctgtgaaCGCGATTAAAGTCCTCACAGAAGAAGGTGCGAGAGGGGTTGTTGTCGTAAGAGATGATTCACAGCTGTTCATTTTGTTTGTCAACTGGAGGAATAGGTACACGTTAAAACTCATATCCATACTAATACTCTTCCTCCTTGTCCTTCTCCTTGTCCTTTTTGTCTTTGTCCTGGTCCTCCTCGTCTTCGTCTTTGTCCGAAATGTGCAGACGCTTGATCTGATCTGAGCGCTGGGATTCGCAATGGGTGTACGAGACGTACGAGAATACGCAGGAAAACTGAGAAATACTGAGTTAAAAGTTCGGAGGACAGAGAGGCTCAATAAAGGATCTTTTTACTTGGCTGTGGGAAGGCGTATCGATGTACCGTCATACAGACAAACCGATACGCCGGCGTGTACCGCGCACCAGTGAGATGGAAAAGCCAGCGAAAAACGTGCCCGAAGAGTTTACAGGAGGTTCTCAGCTCCAACTAGTGGTGTCAAAGAGGTATTGCAAGCAGATGGCAGCCAGATATAATAAAGGGATTGTTGCCAAGTACAGATTGAgtgtcacaaaaaaatatatataataataattataataaaacgaAAGACCAGAGTTCTTGGTTTCGGCCTGAGAGCAGCGTTCGTTCGTTCGTTcattcattttgtttgtttgtttgttcgttCATTCGTGCTCTCGTGAAATTCTTTCTTGTgtggtaataataattataattatattaataatgacaataatacaTGGTGGAGAAGTTCGTGAGGAGTTAAGGCCTCTGATGACCTGTAGGCCATGCTAATcaacaagaaaaaacacaggTTACGACATGAACGCCATGGTGGGGGTTCAAACTTCCGTCCTTGTTGGGTCCATATTGAGTCCATATCGGGTCCTTCAGTGCCAAATGCTGCTTTTGGCAAAGGCTTTTGGCAAGAACCTCCTCCAGGATGGCATGGATAAGATGGGATGAGATGAGATGGGATTGGATGGGATCTGGTGATGAGACAAAAAGAGGTTCGAGAAACAGGAAGATGGCAGAGGAAGGTGGCAGGGGTTAAAATAAGAGCTCGCAATTGGCAAAGAGGTCAAGTAATGGGATGGAAGGGTGATATGGAGTGTGGCTAACAGGCTACAAGGCTAATAGGCTAATAACTGGATTCTAGGTGTGACCATGGCCGGCTCATCTGTCCATGGCTGCCCTGAGCATGAGGAGACGTGAGGAGACGTGAGGAGACGTGGGAAGAGGGAGGCACATATTTACAGATGGAGACGACGATGTTTCTGGACAGCaagtaagtgtaagtgtgtttTGGAAAACGTTGAGTCGTTGTGACATTCCTGAAGAACGGATCCTCTGGTAGAACGGGTCCTTAATTCCTTTAGCTCCGCCCCCAAACAATCCAGCGTAGGTGCAAACAGTACATTCAATCAAATGGTCGATTGGAGGGAGGCGAGTGCCAGCGTTCCACGACCCCGAgccatgctgctgctgctgctttaaggCATGAGATTTGAGTAGTTTTGAGTGTCGTCAATGGAAAAACACACAAGCTCCTCCCCCTGATGCCACTCGTGCCACTCATGCTACATTATAAAAAGCTGTGGAGTCTTTCGCGCGTCAAGCCGCCGTTCCAACTGCTCCACAGTCCCAGCGTTTCTCACGGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233563 True 3130 TUCP 0.40 2 1507320 1542151

Neighbor

gene id symbol gene type direction distance location
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding upstream 418230 1064732 ~ 1089090 (+)
LOC103021728 NA coding upstream 628429 869531 ~ 878891 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding upstream 669400 588887 ~ 837920 (+)
LOC103038565 LOC108425201 coding upstream 931987 543780 ~ 575333 (+)
LOC103038879 NA coding upstream 965550 536293 ~ 541770 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 114955 1657106 ~ 1661821 (+)
snrnp35 snrnp35,LOC107658469 coding downstream 121105 1663256 ~ 1666211 (+)
denr denr,LOC107722339,LOC107706783 coding downstream 162353 1704504 ~ 1709183 (+)
LOC103044833 LOC108410534,LOC108276727 coding downstream 167254 1709405 ~ 1712925 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding downstream 171483 1713634 ~ 1718947 (+)
G172522 NA non-coding upstream 37418 1436426 ~ 1469902 (+)
G172513 NA non-coding upstream 75437 1356795 ~ 1431883 (+)
G172521 NA non-coding upstream 81880 1423606 ~ 1425440 (+)
G172520 NA non-coding upstream 104204 1401798 ~ 1403116 (+)
G172519 NA non-coding upstream 118223 1387020 ~ 1389097 (+)
G172548 rilpl1,LOC108410543 non-coding downstream 132008 1674159 ~ 1677426 (+)
G172576 NA non-coding downstream 152714 1694865 ~ 1697510 (+)
G172583 NA non-coding downstream 165572 1707723 ~ 1769014 (+)
G172600 NA non-coding downstream 231074 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 322950 1865101 ~ 1882035 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 640944 843788 ~ 866376 (+)
LOC103038248 NA other upstream 921122 579323 ~ 586198 (+)
LOC103039814 vdac2,LOC107704122 other upstream 1024384 435773 ~ 482936 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other upstream 1274985 195126 ~ 232335 (+)
LOC103042277 cnnm3 other upstream 1340866 70622 ~ 166454 (+)
G172552 NA other downstream 84648 1626799 ~ 1628805 (+)
LOC103041266 NA other downstream 297200 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 311131 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 452557 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 1176458 2718609 ~ 2726076 (+)

Expression


Co-expression Network