G172548 (rilpl1,LOC108410543)


Basic Information

Item Value
gene id G172548
gene name rilpl1,LOC108410543
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1674159 ~ 1677426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233604
ctctttacaactttacaactgatgctctcaaaaacattaagagacaagaaattcaagtaattaacacttgaggagttcagcacagctgttaactgaaaggctTAATTTTCCAAGTGACATTACCTCGTACAACTGACTGTGAAAATGCACAGAAGGGCAAAACTGTCATATAAGAGTTGCTACTTTCAAACTAACTGGTTTGAAACACTTATTTCGGATTATGTTTAACAGCAGTGTAGGCTGTGTTACCTGTGCAGGTGATGGCGGTGCGGCAGGCTCCTCTGCCTCGCTGCTGGTGTTCTCACCCTGCAGCCGCTCCCTCAGCCGGGCCACTTCCTGACGCAGGTTCCCCAGCTCCTGCTGCCGGGCCTGGGCGAACGCCTCCAGCTCCACCTTCTGCTCGATCAGAGCTTTACCCTGAGCGTCCACCATCGTGATCTTATGCCTCAGGTCATGATTAATCTTCATCAGTcggttctgctgctgctggagTGCTTCAATATCTTCATTCTTCAGGGTCAGTTCTCGATCCTTGGCACGAATCTCATCCCTTTGTTTGTCCACCACCTCCTTCAGCTTCTTCATCACTTGCCTTTCCCTTTCTGACATACCTTCCTGTCTCTGAATGTCCTCCTCGGTCATTGAGCAGTCTTTGACGGACAGGTTGTTGAGGAGGGTCTTGTTCTCCTCCTGCAGCTGGGCGATCTGAGACAACAGATCCTGCGCCTCCCCTCGCCACACGTCCTCCACCAACTCCAGCTCCTGGCATCAAACAGGGTTTAAAAAGCGAATCAGTCCTCAGagaaaactattttttgtattataccttctttattttattttttatcatttggtTCACTTGTAATTTGAACCATTTTAATCTGTATGAAATGGTTATATTTGCACTGAACATGCTGTGACCTGCAGCCCCAACACTGTAAAGAA

Function

symbol description
rilpl1 Predicted to enable protein dimerization activity. Predicted to be involved in several processes, including cilium assembly; epithelial cell morphogenesis; and protein transport from ciliary membrane to plasma membrane. Predicted to act upstream of or within protein transport. Predicted to be located in centrosome; cilium; and cytosol. Predicted to be active in ciliary basal body and cytoplasm. Orthologous to human RILPL1 (Rab interacting lysosomal protein like 1).

NR:

description
PREDICTED: RILP-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233604 True 945 lncRNA 0.47 3 1674159 1677426

Neighbor

gene id symbol gene type direction distance location
snrnp35 snrnp35,LOC107658469 coding upstream 7948 1663256 ~ 1666211 (+)
LOC103046457 kmt5a,LOC108425183 coding upstream 12338 1657106 ~ 1661821 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding upstream 141390 1517362 ~ 1532769 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding upstream 585069 1064732 ~ 1089090 (+)
LOC103021728 NA coding upstream 795268 869531 ~ 878891 (+)
denr denr,LOC107722339,LOC107706783 coding downstream 27078 1704504 ~ 1709183 (+)
LOC103044833 LOC108410534,LOC108276727 coding downstream 31979 1709405 ~ 1712925 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding downstream 36208 1713634 ~ 1718947 (+)
dusp26 dusp26,LOC107720817 coding downstream 70095 1747521 ~ 1753757 (+)
LOC103042387 LOC108410540 coding downstream 83051 1760477 ~ 1766925 (+)
G172522 NA non-coding upstream 204257 1436426 ~ 1469902 (+)
G172513 NA non-coding upstream 242276 1356795 ~ 1431883 (+)
G172521 NA non-coding upstream 248719 1423606 ~ 1425440 (+)
G172520 NA non-coding upstream 271043 1401798 ~ 1403116 (+)
G172519 NA non-coding upstream 285062 1387020 ~ 1389097 (+)
G172576 NA non-coding downstream 17439 1694865 ~ 1697510 (+)
G172583 NA non-coding downstream 30297 1707723 ~ 1769014 (+)
G172600 NA non-coding downstream 95799 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 187675 1865101 ~ 1882035 (+)
G172735 NA non-coding downstream 197375 1874801 ~ 1875147 (+)
G172552 NA other upstream 45354 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 129203 1383495 ~ 1544956 (+)
G172517 NA other upstream 132008 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 807783 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1087961 579323 ~ 586198 (+)
LOC103041266 NA other downstream 161925 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 175856 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 317282 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 1041183 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1787707 3465133 ~ 3739736 (+)

Expression


Co-expression Network