G172552


Basic Information

Item Value
gene id G172552
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1626799 ~ 1628805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233608
TGTGGGAAATGTTGCATGCTGGTGTGCCGGAGGGTCGGCTGATCACGGCCCCTTCAGCGGCCTGGAGCAGGCCCTCCAGGGTCTGGACTTGTCGGGCCGCGGGTCGCTCCTCTTCAGGGATGGCCAGGCCGGACGCAGTGTCCTCGGAGGAGACGATGGAGGCCTCGCTCTCCTTCCCGCCATTGGCACTCGTGTGGTCATGGCTCAGAGCCACAGAGCTGGACACGTCCTCAGAGATGCTGTCATCTGTGGACATGCTTAAGCGGCCTGGCTAGACGGACGCATTTGAGACTTGTAAACTTGTGTTTCCACTTCTCCCATTTTGACGTTTCCCCCCTGAATGCGCTAAGCGATGCCCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233608 True 361 TUCP 0.61 2 1626799 1628805

Neighbor

gene id symbol gene type direction distance location
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding upstream 94030 1517362 ~ 1532769 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding upstream 537709 1064732 ~ 1089090 (+)
LOC103021728 NA coding upstream 747908 869531 ~ 878891 (+)
LOC103037605 ttc28,LOC107602249,LOC107588927,LOC107704161 coding upstream 788879 588887 ~ 837920 (+)
LOC103038565 LOC108425201 coding upstream 1051466 543780 ~ 575333 (+)
LOC103046457 kmt5a,LOC108425183 coding downstream 28301 1657106 ~ 1661821 (+)
snrnp35 snrnp35,LOC107658469 coding downstream 34451 1663256 ~ 1666211 (+)
denr denr,LOC107722339,LOC107706783 coding downstream 75699 1704504 ~ 1709183 (+)
LOC103044833 LOC108410534,LOC108276727 coding downstream 80600 1709405 ~ 1712925 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding downstream 84829 1713634 ~ 1718947 (+)
G172522 NA non-coding upstream 156897 1436426 ~ 1469902 (+)
G172513 NA non-coding upstream 194916 1356795 ~ 1431883 (+)
G172548 rilpl1,LOC108410543 non-coding downstream 45354 1674159 ~ 1677426 (+)
G172576 NA non-coding downstream 66060 1694865 ~ 1697510 (+)
G172583 NA non-coding downstream 78918 1707723 ~ 1769014 (+)
G172600 NA non-coding downstream 144420 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 236296 1865101 ~ 1882035 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 81843 1383495 ~ 1544956 (+)
G172517 NA other upstream 84648 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 760423 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1040601 579323 ~ 586198 (+)
LOC103039814 vdac2,LOC107704122 other upstream 1143863 435773 ~ 482936 (+)
LOC103041266 NA other downstream 210546 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 224477 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 365903 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 1089804 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1836328 3465133 ~ 3739736 (+)

Expression


Co-expression Network