G172576


Basic Information

Item Value
gene id G172576
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1694865 ~ 1697510 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233644
cttcattataaaatataaaaaaaacataatactcAAATTCAAGCTTAAAATCATAAAACTCTCAGTGTAAGATATGTAACATAACATTTGTAACACATGTTTATAAATACCTTCAGAAAAAATACCTTTGGTGTTGTGTCAGAGTCCCTGAGCTGTGAGTTATGTAAGTCCTGAGGTTTTAAAATAGCCCAAAAAGAACTTGGGAGGGTTAAATTATAGAAGAAGACATCCTCTTCGTACAAGCATACAGGAGAAAAAGCACTGTGATCTTCCTGCAAATCTTAAAATGGACAAACTGGCAGGACAGTTCACCCTTCCTTTACAAACAGGTTTGATGGCAGTGAAACAGGAATGACAAAGCAAGGAGCACCATTGAGCCATCTCGTAAGACAGGTTTAACACAGAGAAACAAGTCTAAAAATAAGTTATAGTACTTGATTTGGTTCACAAGGTAAGTTAGTTTGTGAGATAGATTAATGTGCATAAATTAAGTTTACAAACTGTTTTTAGAAAAGCAGTATaaaatcccccccaaaaatcCCTTCAATTCAGTCTGCAAAAACGTAAACtttgaatgttaaaaattatGTCTTCAAAAATACTGCTACTGAAATATATCCAACTTTGAGTTccttcaaaatattttattcacatgTACAGTAGTGTGAAGGAATGCTGGGAGGCTGCTAAGACGTTTTGAGATGTCCATGTGATGTCCTCCATCACTGAGTTTTAATGGAAGATTGGCATCAGAGCTGCTGGTCGCTCTGGACTTCAGAATCAACAACCTGATTTGCTGCTTTTCTTCCAGGGTATTTGTGGAGGACTGGGAGTGGTTGTGACTGCCGCCATTGTTATGGTTATGGTGGAGGCTGCAGCCCGGGTTACATCCACCACTAACACTTgctcctctgtctctgtctcactgCAGTTAATGAGACCCACGATGTCCACTTCACTTCCACTATTACTACACTGGATTATTATGGGATCTGGCTTAGCTCTGGGTCCCTCACATTCACAGCAATGAGCTGGAGTTTCACAGCTGCTGTCTGCTGGTTTCTCTTCCTCAGCAGAAGTTAAATCTTCCCTGCTCAAGGTCTGGGTGGCTGTGTGGTTCATGTCAGCTGATGCACTGGCACTGGTGGCAGTGGTAGACTCTGGAGTTGTATGTGTGTCTTTGATTTGGCACTGCTGATTTCCTGACTCCTCTATCTCAGGTTCATCATGGGTACTATGCCCTGACTCTGCTCCTCCTACAAAATCATCCCTAAAACCATAAACATGCTCCTGTTACTTTGAGCACTTCTTACAAGTTGTCAGAGCCTGATGCATGTTACAACGTTATTACACAttacttttaaagagcaatgaacGTTTTTccaaataattacaaataaattccAGAATATGCAGGTTAAGAGTATATAAGTACTTAGAAATCACAGAGTACTAAAATTAAGAGTATAAAGACATTGAGAAATCTGCTTACTGAGCTAAAATCGAGCTCTCTTTATCAGGTTTCTTAATCAGGTTATTAGACTTACCAGTACGCTGTTTATATGACCACATGAAAAATCAGACAac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233644 True 1587 lncRNA 0.39 4 1694865 1697510

Neighbor

gene id symbol gene type direction distance location
snrnp35 snrnp35,LOC107658469 coding upstream 28654 1663256 ~ 1666211 (+)
LOC103046457 kmt5a,LOC108425183 coding upstream 33044 1657106 ~ 1661821 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding upstream 162096 1517362 ~ 1532769 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding upstream 605775 1064732 ~ 1089090 (+)
LOC103021728 NA coding upstream 815974 869531 ~ 878891 (+)
denr denr,LOC107722339,LOC107706783 coding downstream 6994 1704504 ~ 1709183 (+)
LOC103044833 LOC108410534,LOC108276727 coding downstream 11895 1709405 ~ 1712925 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding downstream 16124 1713634 ~ 1718947 (+)
dusp26 dusp26,LOC107720817 coding downstream 50011 1747521 ~ 1753757 (+)
LOC103042387 LOC108410540 coding downstream 62967 1760477 ~ 1766925 (+)
G172548 rilpl1,LOC108410543 non-coding upstream 17439 1674159 ~ 1677426 (+)
G172522 NA non-coding upstream 224963 1436426 ~ 1469902 (+)
G172513 NA non-coding upstream 262982 1356795 ~ 1431883 (+)
G172583 NA non-coding downstream 10213 1707723 ~ 1769014 (+)
G172600 NA non-coding downstream 75715 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 167591 1865101 ~ 1882035 (+)
G172735 NA non-coding downstream 177291 1874801 ~ 1875147 (+)
G172736 NA non-coding downstream 187698 1885208 ~ 1888464 (+)
G172552 NA other upstream 66060 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 149909 1383495 ~ 1544956 (+)
G172517 NA other upstream 152714 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 828489 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1108667 579323 ~ 586198 (+)
LOC103041266 NA other downstream 141841 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 155772 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 297198 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 1021099 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1767623 3465133 ~ 3739736 (+)

Expression


Co-expression Network