G172583


Basic Information

Item Value
gene id G172583
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1707723 ~ 1769014 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233654
ttctttttttttTCAAAATCAAAAGGATTTTAATAACATTTGTTCCCAGAACATTCCAGAGGATATGAATCATACTCTGTGGTTTTGAAGGCCATGAGAATACTGAACCTcttcaacaacaaacaaattcTGATCTACTTCTCTTACTAACAAAAATAATTCGTAAAGAATCTTGTTCCAGCTTTAATATTTACTTTGTTAAACAAATGGAGTTTCTCATAATACGTAAAATGCCAGGACACGTGGAACAAGTATTTCATTAAGGAGAGGAATGGCTtagaaaatcacaataaaaaatgGGATTAACAAATGAAAACGTAATGATTGGAGGGGCGGGAGGGGTGGGTGTCGATCTTTAAAGCTGGCCGCAGTCGGCAATGAGGACCTTAGCGGAGCACTTCCCGCTGCTGCTTCCCTTCTTCTCAACAGCCTCGACGACATCAATACCCTCAACGACTTTCCCAAACACAACGTGCTTTCCGTCCAgccAGCGGTATCAGCAGTGCAGATGAAGAACTGGGAGCCGTTGGTGTTGGGTCCAGCGTTGGCCATGGACAGTGTGCCCAATCCCTGGTGCTTCAGGGTGAAGTTCTCATCAGCAAACTTCTCACCATAGATGGACTTTCCTCCAGTTCCGTTGTGCTTGGTGAAGTCGCCTCCCTA
>TU233655
gtttttttttttttTCAAAATCAAAAGGATTTTAATAACATTTGTTCCCAGAACATTCCAGAGGATATGAATCATACTCTGTGGTTTTGAAGGCCATGAGAATACTGAACCTcttcaacaacaaacaaattcTGATCTACTTCTCTTACTAACAAAAATAATTCGTAAAGAATCTTGTTCCAGCTTTAATATTTACTTTGTTAAACAAATGGAGTTTCTCATAATACGTAAAATGCCAGGACACGTGGAACAAGTATTTCATTAAGGAGAGGAATGGCTtagaaaatcacaataaaaaatgGGATTAACAAATGAAAACGTAATGATTGGAGGGGCGGGAGGGGTGGGTGTCGATCTTTAAAGCTGGCCGCAGTCGGCAATGAGGACCTTAGCGGAGCACTTCCCGCTGCTGCTTCCCTTCTTCTCAACAGCCTCGACGACATCAATACCCTCAACGACTTTCCCAAACACAACGTGCTTTCCGTCCAAGCGGTATCAGCAGTGCAGATGAAGAACTGGGAGCCGTTGGTGTTGGGTCCAGCGTTGGCCATGGACAGTGTGCCCAATCCCTGGTGCTTCAGGGTGAAGTTCTCATCAGCAAACTTCTCACCATAGATGGACTTTCCTCCAGTTCCGTTGTGCTTGGTGAAGTCGCCTCCCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233654 True 663 lncRNA 0.43 3 1764739 1769014
TU233655 False 662 lncRNA 0.43 3 1707723 1769014

Neighbor

gene id symbol gene type direction distance location
snrnp35 snrnp35,LOC107658469 coding upstream 41512 1663256 ~ 1666211 (+)
LOC103046457 kmt5a,LOC108425183 coding upstream 45902 1657106 ~ 1661821 (+)
LOC103035435 LOC108425189,LOC108276927,LOC107706776,LOC107554527 coding upstream 174954 1517362 ~ 1532769 (+)
LOC111195000 LOC108425194,LOC107653585,LOC107704125,LOC108277218,LOC107709189,LOC107602252 coding upstream 618633 1064732 ~ 1089090 (+)
LOC103021728 NA coding upstream 828832 869531 ~ 878891 (+)
LOC111194965 mrps24 coding downstream 190071 1959085 ~ 1961614 (+)
polm polm coding downstream 205231 1974245 ~ 1981134 (+)
LOC103032544 NA coding downstream 221751 1990765 ~ 1993332 (+)
ddx56 ddx56 coding downstream 240646 2009660 ~ 2018739 (+)
ash2l ash2l,LOC107704134 coding downstream 287351 2056365 ~ 2073303 (+)
G172576 NA non-coding upstream 10213 1694865 ~ 1697510 (+)
G172548 rilpl1,LOC108410543 non-coding upstream 30297 1674159 ~ 1677426 (+)
G172522 NA non-coding upstream 237821 1436426 ~ 1469902 (+)
G172521 NA non-coding upstream 282283 1423606 ~ 1425440 (+)
G172520 NA non-coding upstream 304607 1401798 ~ 1403116 (+)
G172600 NA non-coding downstream 4211 1773225 ~ 1776601 (+)
G172733 NA non-coding downstream 96087 1865101 ~ 1882035 (+)
G172735 NA non-coding downstream 105787 1874801 ~ 1875147 (+)
G172736 NA non-coding downstream 116194 1885208 ~ 1888464 (+)
G172737 NA non-coding downstream 119528 1888542 ~ 1889596 (+)
G172552 NA other upstream 78918 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 162767 1383495 ~ 1544956 (+)
G172517 NA other upstream 165572 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 841347 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1121525 579323 ~ 586198 (+)
LOC103041266 NA other downstream 70337 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 84268 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 225694 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 949595 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1696119 3465133 ~ 3739736 (+)

Expression


Co-expression Network