G172600


Basic Information

Item Value
gene id G172600
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1773225 ~ 1776601 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233682
AAGTCTTTacttaaaaaacataatggaaATATTTCACatctttagaaaaaaacaaaaatgatttcAATTTTACAAGTTTAATTCAATCGTTAGAACTTAAAAGATTCACCTACACATgacaaacatctttttttttttttttttctcgaacAGTTTGATTAACAGTAAGTGTGACTTGGTGCTGGTCTCTCGAGGAAAAGTCTCTCAGCGCTCTCTTATTGAAAACCTTCGAAAGTCACAGATCTGATGGgaaattaactgttttttttttcttcttcttattcttcttcttctttttaacaAATTCATAAACTTTGCTAGATAACACACGTAAGAGAGATGCATACAGGTCCACCAATTatctttataattattataataacaataattatataatcaAAGATAAAATTATATGATACACAAATGTCTTCAAAAACAATTGCACATCCAATAAACTCCTGACACTCCCTGGATTGTTATGATACAAACTGCACAGAGCTGACCGTGTCCAGAGAGGGCGgccataaataataaaataagacgAGACAGCAGACGGGGTGGCAGATTGACTGAccgactgactgactgacagactGACGACTGTTCTCTTTAGTCCACAGATTCTCCTTCgcaaaaatgaactgaaatggaCAACGGGAGGCAAACGGGGGCTGACGAAACCAACACAGCTCGTCATAGTGTTAAACTGTGAAAGGGGTGGGCGTGTGCGTGTACATCCGAGCTTTATGACGTTTTCATGGGgtggagagagatagatagagaattagaaagatagaaagaaagaaagaaagagagagagagagagaggatgaagtGTGTGTTCACATCTGTAACAATtatagttctgtatctgtacaTCATTTCACACCACGCCCCTTCAACTGCTCCTCGTCAGTAACAAGTTCGGGTATCGTTGATATAGACTACAGAGCAGACCGTCTGGAGGCCACGAGCGCGGGCGCGAGAGGGGAGGGGCGAGACAGAAGCAGAACGTTGGGAAAGTTTGGGCCCTGATTACACTCTTTCgagagctgttttttgtttatagcGAGCTGTTCTGTGCGTGTAAATGCCtgtgattatattatatatacccTGTCCTCAGTTTGTGATTCGGGTTGCTTGTGCTCCTTaaaactctcctgtttttgtttcagactcctcgtttaaaaaaaagaagaagaagagggaaTTCCAACCAATTTTCCAAAatttagtacaaaaaaaaataaaatagcagcaccaaaagtcatgggacagcggtatgtaaattgatcatacagtgttacctcaggggaggGCCTGGGAATGGCCACACCTGTATTGTGGTGTAGGTGGTGAGGTGCTGTCTTGTGACTGAGTTCAATTGAAAtgaaactgattttttaaaatgcaaattatGCTCAAGTTCGGGAAATGACTCTCTGTTCACTCATTGGCTCACACAGACATTACCAGTACTGTGTACTGCAGGGCTGGAAGGATCAAGTCTGAGTAATGTCCAGAtatctgttatatatatatatatatatggattacGGGTGTGTTACAGAGGCTTTAAAACCTTATTTCCATCTTAAGGACTGGCTGTAAATCTGGGAAATCACTGGAATTCCACTTTACCAACAAAAAATACTTGTGCATACCAGAACAACTCAACATCTCAACGCCCACCAATGAGAGAGAACATGAAGACGGCAAACAGTAAATCAGTGTATCAAGGCTTTGTTCCTTCTGTCGTCATGGCTGTGATTGAACTGTAATCAGTGTAGATCAGGATCTGTGCAAACAGACAGGAAAGGAAGACgaagtttttttaaaagtagaatagatgtttaatatcaaacaaacaaacgaacgAGTAAATGAGCAAACGAGCGATTGAGTGAGGAGTTGGAGAGCAAGGAGTGGAATCGATGAGCGAGTACGGTTGTAGCTGGAGGCATGTATGTACGTATCTGTGTGTGCTTCTTGAgattttacgtgtttattttttgcttgcgttaaaaaaaaaaaaaaaaacttgcactcCCGTGGATTGTACGTATTGGATTTTCGCCCGTCCGTCGACACAGTCAGCGGTATTAGCGCTATATTGTCACTCAGGATGTCTTCTGCCTCCAGACCGAGCCTCTTGTTTATTCCCCCTCATTTCTGACGAGTTTGGCAAAGTTCTGCGATCaaacatttacagtacatttccTCAATGCTACTATAAGATATGAGTCGCGTATCTGATCTGATCATTTCTGATCTCTAAAACACCAAGGTGAAGAACACGCAGGGCATGCAGACTGCGAAGCGGCGCCTTCCGACACAAAGCATAAACTGACTCTTGGACTTCAAGTAAAAGTACGATAAAAGTTTGCGAGATCAAGTAATGAGAGTGAGAACCTGTAGGATAGGGTGCTGCTAGCTTACTGGCgggttttttccttttatttttttataatatatatttaattttttgtttgtttttttaaacctgttgaGGTAAGGCGTGTCTGtgtcttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtttgttttctttgttagcAAGGTCCATTGGCATTCCCAGCTTTGACTTTAAGGTTCAGCTTAAACAGAGGCAAGAACTGTTTTGGCTTTCCCCTTTTGTGtatctttctttcttaaaaAGAGCTTGTAGCTTTTATCGAAATTCGGTCCTCCTCCTTTTGTAACACAAACGGAGGATTTTACAGAACGACAGTACTACTTCACACTCGATTTTAAAACGTGATTAAGAACAAACGACAAACTGCCCTCCTCCAGACgcactataattttttttatacaccaaGCACAAGTCTGACAGATGAGGTGCTTTTCTACAAATGGTTTTTGCAGGAGCTGGAAATATGAAAGACTCTtccgaattaaaaaaaagaaaggaaaaacaaacaataaaatcttTTGACATAGTTCAGAGGCAGACTAACATGTAGGTTTTGTTGCTGAAGTAGCATTAAAACATCTTCCGCACCCTCCCCGCCGCGAGAACGGCTGCCGTGAGCATTCCAGTCTCCAAGGAACGTGGCGGCgggaaaaagaagaataaatcaCACAAAATCTGCACATCTGCAAGGATTCCCAGCCCCGGCGCCCAAACCTCCCCGTCAGCGTTCTGAGAGTATCTAGGGCAGGGTCTGGGGGTATTTTTCAGGACGGTGTGGCCAAGCTGGAGGCGCTGTGGGAGCTGTGAGGGGCTCAGTTGCTCTCGAACAGTGAGAGCAGGTCATCGTTGCTGTTGTTGGGAAGGTCTGGAGGACCCAGGTAGGACAGAAGCTCGTCTGGGTTCGTTAGCTCTGGG
>TU233683
AAGTCTTTacttaaaaaacataatggaaATATTTCACatctttagaaaaaaacaaaaatgatttcAATTTTACAAGTTTAATTCAATCGTTAGAACTTAAAAGATTCACCTACACATgacaaacatctttttttttttttttttctcgaacAGTTTGATTAACAGTAAGTGTGACTTGGTGCTGGTCTCTCGAGGAAAAGTCTCTCAGCGCTCTCTTATTGAAAACCTTCGAAAGTCACAGATCTGATGGgaaattaactgttttttttttcttcttcttattcttcttcttctttttaacaAATTCATAAACTTTGCTAGATAACACACGTAAGAGAGATGCATACAGGTCCACCAATTatctttataattattataataacaataattatataatcaAAGATAAAATTATATGATACACAAATGTCTTCAAAAACAATTGCACATCCAATAAACTCCTGACACTCCCTGGATTGTTATGATACAAACTGCACAGAGCTGACCGTGTCCAGAGAGGGCGgccataaataataaaataagacgAGACAGCAGACGGGGTGGCAGATTGACTGAccgactgactgactgacagactGACGACTGTTCTCTTTAGTCCACAGATTCTCCTTCgcaaaaatgaactgaaatggaCAACGGGAGGCAAACGGGGGCTGACGAAACCAACACAGCTCGTCATAGTGTTAAACTGTGAAAGGGGTGGGCGTGTGCGTGTACATCCGAGCTTTATGACGTTTTCATGGGgtggagagagatagatagagaattagaaagatagaaagaaagaaagaaagagagagagagagagaggatgaagtGTGTGTTCACATCTGTAACAATtatagttctgtatctgtacaTCATTTCACACCACGCCCCTTCAACTGCTCCTCGTCAGTAACAAGTTCGGGTATCGTTGATATAGACTACAGAGCAGACCGTCTGGAGGCCACGAGCGCGGGCGCGAGAGGGGAGGGGCGAGACAGAAGCAGAACGTTGGGAAAGTTTGGGCCCTGATTACACTCTTTCgagagctgttttttgtttatagcGAGCTGTTCTGTGCGTGTAAATGCCtgtgattatattatatatacccTGTCCTCAGTTTGTGATTCGGGTTGCTTGTGCTCCTTaaaactctcctgtttttgtttcagactcctcgtttaaaaaaaagaagaagaagagggaaTTCCAACCAATTTTCCAAAatttagtacaaaaaaaaataaaatagcagcaccaaaagtcatgggacagcggtatgtaaattgatcatacagtgttacctcaggggaggGCCTGGGAATGGCCACACCTGTATTGTGGTGTAGGTGGTGAGGTGCTGTCTTGTGACTGAGTTCAATTGAAAtgaaactgattttttaaaatgcaaattatGCTCAAGTTCGGGAAATGACTCTCTGTTCACTCATTGGCTCACACAGACATTACCAGTACTGTGTACTGCAGGGCTGGAAGGATCAAGTCTGAGTAATGTCCAGAtatctgttatatatatatatatatggattacGGGTGTGTTACAGAGGCTTTAAAACCTTATTTCCATCTTAAGGACTGGCTGTAAATCTGGGAAATCACTGGAATTCCACTTTACCAACAAAAAATACTTGTGCATACCAGAACAACTCAACATCTCAACGCCCACCAATGAGAGAGAACATGAAGACGGCAAACAGTAAATCAGTGTATCAAGGCTTTGTTCCTTCTGTCGTCATGGCTGTGATTGAACTGTAATCAGTGTAGATCAGGATCTGTGCAAACAGACAGGAAAGGAAGACgaagtttttttaaaagtagaatagatgtttaatatcaaacaaacaaacgaacgAGTAAATGAGCAAACGAGCGATTGAGTGAGGAGTTGGAGAGCAAGGAGTGGAATCGATGAGCGAGTACGGTTGTAGCTGGAGGCATGTATGTACGTATCTGTGTGTGCTTCTTGAgattttacgtgtttattttttgcttgcgttaaaaaaaaaaaaaaaaacttgcactcCCGTGGATTGTACGTATTGGATTTTCGCCCGTCCGTCGACACAGTCAGCGGTATTAGCGCTATATTGTCACTCAGGATGTCTTCTGCCTCCAGACCGAGCCTCTTGTTTATTCCCCCTCATTTCTGACGAGTTTGGCAAAGTTCTGCGATCaaacatttacagtacatttccTCAATGCTACTATAAGATATGAGTCGCGTATCTGATCTGATCATTTCTGATCTCTAAAACACCAAGGTGAAGAACACGCAGGGCATGCAGACTGCGAAGCGGCGCCTTCCGACACAAAGCATAAACTGACTCTTGGACTTCAAGTAAAAGTACGATAAAAGTTTGCGAGATCAAGTAATGAGAGTGAGAACCTGTAGGATAGGGTGCTGCTAGCTTACTGGCgggttttttccttttatttttttataatatatatttaattttttgtttgtttttttaaacctgttgaGGTAAGGCGTGTCTGtgtcttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtttgttttctttgttagcAAGGTCCATTGGCATTCCCAGCTTTGACTTTAAGGTTCAGCTTAAACAGAGGCAAGAACTGTTTTGGCTTTCCCCTTTTGTGtatctttctttcttaaaaAGAGCTTGTAGCTTTTATCGAAATTCGGTCCTCCTCCTTTTGTAACACAAACGGAGGATTTTACAGAACGACAGTACTACTTCACACTCGATTTTAAAACGTGATTAAGAACAAACGACAAACTGCCCTCCTCCAGACgcactataattttttttatacaccaaGCACAAGTCTGACAGATGAGGTGCTTTTCTACAAATGGTTTTTGCAGGAGCTGGAAATATGAAAGACTCTtccgaattaaaaaaaagaaaggaaaaacaaacaataaaatcttTTGACATAGTTCAGAGGCAGACTAACATGTAGGTTTTGTTGCTGAAGTAGCATTAAAACATCTTCCGCACCCTCCCCGCCGCGAGAACGGCTGCCGTGAGCATTCCAGTCTCCAAGGAACGTGGCGGCgggaaaaagaagaataaatcaCACAAAATCTGCACATCTGCAAGGATTCCCAGCCCCGGCGCCCAAACCTCCCCGTCAGCGTTCTGAGAGTATCTAGGGCAGGGTCTGGGGGTATTTTTCAGGACGGTGTGGCCAAGCTGGAGGCGCTGTGGGAGCTGTGAGGGGCTCAGTTGCTCTCGAACAGTGAGAGCAGGTCATCGTTGCTGTTGTTGGGAAGGTCTGGAGGACCCAGGTAGGACAGAAGCTCGTCTGGGTTCGTTAGCTCTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233682 True 3355 lncRNA 0.41 2 1773225 1776601
TU233683 False 3353 lncRNA 0.41 2 1773225 1776601

Neighbor

gene id symbol gene type direction distance location
LOC103042387 LOC108410540 coding upstream 6300 1760477 ~ 1766925 (+)
dusp26 dusp26,LOC107720817 coding upstream 19468 1747521 ~ 1753757 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding upstream 54278 1713634 ~ 1718947 (+)
LOC103044833 LOC108410534,LOC108276727 coding upstream 60300 1709405 ~ 1712925 (+)
denr denr,LOC107722339,LOC107706783 coding upstream 64042 1704504 ~ 1709183 (+)
LOC111194965 mrps24 coding downstream 182484 1959085 ~ 1961614 (+)
polm polm coding downstream 197644 1974245 ~ 1981134 (+)
LOC103032544 NA coding downstream 214164 1990765 ~ 1993332 (+)
ddx56 ddx56 coding downstream 233059 2009660 ~ 2018739 (+)
ash2l ash2l,LOC107704134 coding downstream 279764 2056365 ~ 2073303 (+)
G172583 NA non-coding upstream 4211 1707723 ~ 1769014 (+)
G172576 NA non-coding upstream 75715 1694865 ~ 1697510 (+)
G172548 rilpl1,LOC108410543 non-coding upstream 95799 1674159 ~ 1677426 (+)
G172522 NA non-coding upstream 303323 1436426 ~ 1469902 (+)
G172521 NA non-coding upstream 347785 1423606 ~ 1425440 (+)
G172733 NA non-coding downstream 88500 1865101 ~ 1882035 (+)
G172735 NA non-coding downstream 98200 1874801 ~ 1875147 (+)
G172736 NA non-coding downstream 108607 1885208 ~ 1888464 (+)
G172737 NA non-coding downstream 111941 1888542 ~ 1889596 (+)
G172741 NA non-coding downstream 128181 1904782 ~ 1911725 (+)
G172552 NA other upstream 144420 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 228269 1383495 ~ 1544956 (+)
G172517 NA other upstream 231074 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 906849 843788 ~ 866376 (+)
LOC103038248 NA other upstream 1187027 579323 ~ 586198 (+)
LOC103041266 NA other downstream 62750 1839351 ~ 1850216 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other downstream 76681 1853282 ~ 1855754 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 218107 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 942008 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1688532 3465133 ~ 3739736 (+)

Expression


Co-expression Network