G172725 (ogdh,LOC107554543,LOC107714098,LOC107656768)


Basic Information

Item Value
gene id G172725
gene name ogdh,LOC107554543,LOC107714098,LOC107656768
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1853282 ~ 1855754 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233877
ACGGTTTCTAAACGAAAGATGCATTTATTGAATGAAGGATTGCAGTAGTTTGGAATGAACATTTAcacaattaagaaaataaataaaactcccttttttttctttagttctgCAGAGATCAGTTCAACCTGCAGCCTGATCTCTGTCTGAATTCCATAAAATACAGGAGGGTAAAATAGTTCCCACAGTCTTCACTTGAGTGATCTCCTGAATggttaaagtttttattttggcACTGAGGTCAGAGATGAAGCACTGAGAAGAACGTGAGAAGCAGAAAAGGTGGATATGACCTTCTTTTACTAGACTTTAGCCCtaataaatctgtatttttacatcaaatCAGAGCTGAGAGCTGAGCAAAGTGTTCGAGTTTACATTcaaattcagtaaaactgaaataaagaaattattGATGAGCAAAGCAGGAAATATTCAGATATTCTGCTGATATGAGATCAGTTAAAACATTATGTACAGCCCTGCAGAGTCAGCCAGGagcattatatatgtattatatatgtattataaatatatatttcgcAAGTCCTTGCAGATTTTTGGATGGTAGTTTAAAAACTTGCACCGTGGCACATGACTGTGCATGTTTATAAATGAAGGTTTCAAgttctgtttatatatttacccAGATAAAATGCCCATTTGTGTTTGTATGAGTATCCCAACCTGGATCCAGAAGGGTCTATCCATGAGTTCCATGTTGATGCTACATATGGAGGCTCTTTAGGGTCAGTGATGGGAACAGAAGAGGTGGTAACAACATATACAAACCCTCTCAGAGTTTAAAACCCACCTGGAACCCTCCTGGCCCTCAACCCACCCATGTAACCCCTCTCTGGCCTGCTGGCTGGGTCGGCTCTTGCAGCAGCACTAagcttttttttcatgtaaaataaataaaaaaaaaatcagaatttttTATGCTAATGTTCGGAGCAGCGTGTCTCGACCGGCTGGTAAACACTTTAATCCCACCAGCGGATCTATTGCTGCATTCTTTGGAGGTTTTCAGTGCCGTTAGTGGAGCTGGAGGAAGGACAGGACGTTCAGGAGGACTGAGGTATTCAGGACTGTCCCCGGAAGGCGTCCTGGTTGAAGGCCGTGTTCAGGAAACGCTCCAGCTCCAGGAGATGAGCCTTCTTATTTCCGGTGGCTGGAGCAGCTGCTGGCTCTCGTCCAGCATAaCGGACAGGATGGGCGTGGTTAATGGTGGTGGAGATACGAGGTTTTATATAATCATAGTAGCCCTGATTCTTGTGCTCCTCCTGACTCCACATCACCTCAGCCTGAGGGAACTTCTCAATCTCTGCTTTAACCAGATCAAACGGGAACGGAGAAAGCTGTTCAATGCGAGCGATGGCCACAGTTTCCTCCATCCCTCGGCTCTTGCGCTCTTTGGTCAAATCATAGTAAACCTTTCCTGTGCAGAAGATGATTCGTTTCACTCCAGCAGGATTCTGGGATGCGGCGCCCTCCTCTGGGATCAAACGCTTGAAGTGT

Function

symbol description
ogdh Enables oxoglutarate dehydrogenase (succinyl-transferring) activity and thiamine pyrophosphate binding activity. Involved in 2-oxoglutarate metabolic process; histone succinylation; and succinyl-CoA metabolic process. Located in mitochondrion and nucleus. Part of oxoglutarate dehydrogenase complex.

NR:

description
PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233877 True 1521 TUCP 0.43 3 1853282 1855754

Neighbor

gene id symbol gene type direction distance location
LOC103042387 LOC108410540 coding upstream 86357 1760477 ~ 1766925 (+)
dusp26 dusp26,LOC107720817 coding upstream 99525 1747521 ~ 1753757 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding upstream 134335 1713634 ~ 1718947 (+)
LOC103044833 LOC108410534,LOC108276727 coding upstream 140357 1709405 ~ 1712925 (+)
denr denr,LOC107722339,LOC107706783 coding upstream 144099 1704504 ~ 1709183 (+)
LOC111194965 mrps24 coding downstream 103331 1959085 ~ 1961614 (+)
polm polm coding downstream 118491 1974245 ~ 1981134 (+)
LOC103032544 NA coding downstream 135011 1990765 ~ 1993332 (+)
ddx56 ddx56 coding downstream 153906 2009660 ~ 2018739 (+)
ash2l ash2l,LOC107704134 coding downstream 200611 2056365 ~ 2073303 (+)
G172600 NA non-coding upstream 76681 1773225 ~ 1776601 (+)
G172583 NA non-coding upstream 84268 1707723 ~ 1769014 (+)
G172576 NA non-coding upstream 155772 1694865 ~ 1697510 (+)
G172548 rilpl1,LOC108410543 non-coding upstream 175856 1674159 ~ 1677426 (+)
G172522 NA non-coding upstream 383380 1436426 ~ 1469902 (+)
G172733 NA non-coding downstream 9347 1865101 ~ 1882035 (+)
G172735 NA non-coding downstream 19047 1874801 ~ 1875147 (+)
G172736 NA non-coding downstream 29454 1885208 ~ 1888464 (+)
G172737 NA non-coding downstream 32788 1888542 ~ 1889596 (+)
G172741 NA non-coding downstream 49028 1904782 ~ 1911725 (+)
LOC103041266 NA other upstream 3066 1839351 ~ 1850216 (+)
G172552 NA other upstream 224477 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 308326 1383495 ~ 1544956 (+)
G172517 NA other upstream 311131 1507320 ~ 1542151 (+)
LOC111194999 pitpnb,LOC108425199,LOC107602250,LOC107709228,LOC107706770,LOC107704163,LOC107653151 other upstream 986906 843788 ~ 866376 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 138954 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 862855 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1609379 3465133 ~ 3739736 (+)
G173094 NA other downstream 1884548 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 2053188 3908942 ~ 3931991 (+)

Expression


Co-expression Network