G172741


Basic Information

Item Value
gene id G172741
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1904782 ~ 1911725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233899
CCACACAtgcaacacacactctctcatttACACctcctctctcttacacacacacacacacacacacacacactcagggaTTAGACGTGCAGTtgatattcttattcttatccATTGATACTTGTTTATAAAGCGTCCAGTTCATCAGATAAGCAATAAGAACGATGAAGATCAGCTGCGTATCttataatcaatcaatcaattaaatgAGATGACTGAGGGAAGCTCTTATCAGAGGGTGAAATGTCGCCCCGTTATCGCTGGAGTTTCGTTCTTACAGAGCTAAAGAcgtaaagatagatagatagatacagcgatagatagagagatacacagacagagagagagagagagaaaccttACCTTGGCACAAGTTTTAGAGAGCGGAGAGAGGAAGATGAGgcaaagagggagagagagattacgAGAGAATGgattaagagaaagagagagagagtgacaggaacagagagagagtaataataatagtaataatattaaaataaataaaagaggaGCGTGTGGAAGACCTTTGGTCGTTGACAGAGGGCGGGGGGTTCAAATGCACGCTGACCAGAGAGAAGAGTTTGGGTCAGCCTGAATTTGACCACAAGTAAGAGGGACTACTCAACATCTACTCAACTACTCAAAGGAATACCGCCaccaaaaatgctaaaatgcagCTAAATGACGAATAAAGGCTAAATGACTTCAATTCCCAATTAGCGATCTTAGCGTTTTTGGGTATTCCTTCAAGAACACACAACAAACGATCTCACATCAATCTCACGTCCTCCCGTCACTGTTCCTGAAGCACCTGGGGAGTAACCAATTTAACAACGCCCCGAATAAACGACTGATAAATAAACCCACAAATAAACGCACACAGACGCACAACAACAGAGACGCTCAACAAAAGCTGCAGAGGAGAGAAAGTCAGTCACAGCTTACAGCAGAAATTCCACTCAAACCGAGGCCTCGGCTCAACAACAAGaccaataaacagaaataatataatataatatatggagaaaaatgctaacagaACCGTAACCAGCGGAACCATAACCTACACAGTATTAGCAGTAATAGCATGAGCAGAGAGAATGTACCATCATGAGAATTTGGGACTAATCAATAAaaagtaggcctgtcatgataaaacgatattttgttccagaaattattgtgataaacgatattgttggcatttttAGACCTCTAATTTggcactaataaaataataacataatattgtAACAAATAAACTTTCCATTCGTGTTTACGCACCTAATTTCCAGCTTGAACCAAAGTAGGTTATAGTAGGTTCTTAAGTGTgcactatatatacagtacatacacatTTCAAAGTGCGGAGCCCCGGTCTGACCCAGCTGGGGTGCGTTGAACCGGCATAAAGACCTTGCCTCATAGTGATAGTGAATGGCAGGCTGAGGCAACACAAACCtaagagacactaaagttaagcaACTAGAGCCGTCCTGGGCCGTTCCtgtgtttctttaagtttgttttgggtgtaaatATAGGGCATTTTTCCTAGTAAAGGAGCAGCCATGCCCACAGTCACAATATATGTAAGTGCAAtttgtaagtgcaaacacaaaAGTCAAGATACAGTGTCCAATTTATCAGTGAAGATAGAAATCTTAACAATGCTATAAAGCTCACAAGCTCAGTTCAAAAACTCCTGTCCAAAAAACTGTCCATCCAATCGACCAATCCCCGACCAGAACACGGCGCTTTGCACCGCCTCACTGACATTGAACCCCCTTTCCTTAATGCAAAGATTAAAGTCTTCTCAGTCACTCATGCAACGCGATCCCGGACGCCGTCTTCAGCATCGCAACACATGCATACGGCACCCGTGCAGCATTCAGCAAACCAGCAGGCACAGGAGCACTGGTGGTGGATAGAGACCTATCAGGAGAGAAGTGTCTGAGAaccagagagaggaaaaaagagagagagaaagaaagggagcaCAGCTGGAGGATGGGAGAGCGGTGAAAGGACTGGAGGTagagatgcactgaatatttgccAACCAAAATTAGTAAAAAGACCAAATTTATAAGCTCAGACCAAATTTATAGTCTCAGAGCGCTGCTGTACAGAACACaggaagtgagggagagagctgGCAGGAAGAGCCGACAAACaacatgtttaagttcatttttactctcTACTCAGTTTAAGTCAGGTAAACATCACACTTGGACAGGTTAACCTTGGCATGGTTAGGATAATACAGTGAACTGAGCTaaattagctttagcttttgtttatttatgaaaaGTCTGGCTGCATttcaatgctgaggtaaatgtatggttagattagcactactgaggtaatttTATCACTAAAATTTCCTTGCTgaagtacatttatgactagagtagcactactgaggtaaatgtatgagttgAGAATCAATtttgaggtaaattaatgacaAAAATTTCACCACTGAAGTAAACTTATTAAAATCAGAATAGCAttactgatgtaaatgtataattatagcAGCACTAACaaagtaaatgtatgagtaatatttcactgctaaggtaaatttatgGTTAGACTAGCACTACGTAGTGatttttagtgattttagtaaagtgtgtctgccaaatgtttttttggttttggtaaaaattaataatttggTGCGTCTCTATCTAGAGATGGTGCTGAGTGTGACAAAACAGTACAGGTTAAAGAACAGACGGAGAAGatgatggaggaggaggaacgTGGGGTGGAGAAGCACAAAAAGAAAGACtagaaagaaatgaaagaggggaatgaaaaagaaaaaagaagagagagatagaagcaGAGAAACATGGAATGATAAAGTttagtaaatactgtatatctaaaGATGTCCTGAACTGACCAATCGATTTAATGAATTTAGAACTGACTGCTGTAATTTTGTGTAGGTTTACAGAACATAACAGCACCACTGTTAGCGGTGGCGTCTCATTGGTTAGAGCACCAGGTTATGGATGACAGGGTCGTGGGTTCGATACCTGAGTTTGATAGTTTGCTatggtgagtgtgtatgtgtgtgtgtgtgtaagtgtgtgttcactgtatAGATAAGTTAAAGGTGCAGATTCAGCTCAtctggaaaggctttccacaaggtttagggaTGTGTTTAAGGGGATTTTTGACAATTTCTTCACAAGGGCGTATGTGAGGACAGACACTGATGTTGGGTGAGTGTTTGGAGATGTGAAGCTTGGATGGATTTAAGCTGCTCATCTATGGAAACTCTCTATTCCATGAGTCTCTTTACACTCTACTGTTGTTGatttaatctgaagctacataaagtttggaggtgttgttttAGATGGGTGGGAAGAatgacaggatttcggctcttgctcatgaatattcatacatgcaaacatatatatacgcCTCTGGTTGGCTAACAGTAATGCAGCAGAGTACTCCTAGTTACCTTCCCCCCACAGTcatatttacagctctaaaactcaaaggacaaaatgttttcagagatacagcttGGAGCAGTTTCACCAAGACGAAGACCCAGAGTCTATATACGCtctgtataattaaaaaaaatctgacatgAACGGCGcctgttctgtcgagttgtgctaccttatCAAACCGTGCTCCcgtaatgtatatatttgaggtctctgtaaaatgcagaatcaactggagatccgatttaaacctagagctacttacacaagatagctaacgatAACTAGttgtgtaaacagaagctgttgAACGAGaccatgaactcactggttgacgtctctctgatcaactcgtatttctgaggattttcttttactagctactgcagacctTTAATAATCTGGCTCTGATCGGTCTGGATTAGGACATCCCTAAATATACTCATCCTTTAAAGTGATCAGCCGGACTCTGAGCTgtccacacagagagagagagactgaggacGTGACATGCTACACTCCATGCTGAACTGTGGACCACAcaccagaaaaagagagagaaagagagagataaagataaagaaagagtgatagagagagagaaagagagagggaggaaagaaCGGCGAGAGAGGGATGAAGAGAAGGAAGAGTGGCAGGACCAAAGCAATCgacatagagagagatagagaaagagagagagagagaaagagtgagagagagagagagagtgagagaaagcaaaaaaaatgagagatagaaagaaagagagtgagtgagagatagagacagtAAGTGCGAGCAAAAaacattgagagagagagaaagagagagagaaagaaagattaaagagaaagagtgagggagacagagagagatagatagagagtaagagaaagatagaaagagagtgagagtaagtgagtgagtgagtgagactaagagagagagagggagagagagatccGAGTTCATGTAAAAGCTTCCTCGAACAAGTGCACTGTCTCCGCCGCCCACCGACCTGCTGTcgggagtgtgagtgtgtgagaggcgCGAGTGTGTGAAAGAGCAGATGCTTCATTAGAGCAGACATAAATCACATGTTATTATAAACGCCAGTACCCGCGCTCGCCCTGGCACAGAGGCACACACCCAGTCGACTGACTGCTTTACCAGACGCAGTGTATGAGTGCCTGAACTTCCTggacagacacatacacacacacaaacacagacacacacaaacactgggCGTCCTTTCTTAACGCTCGTTCAAATGTGAAGTAGGAGTCTGTCACTCACACTGAGTTATGACCTCAATATTAATTCTCTAATGGCTCCTACTGctcatatataaaaaacatttcatgATTCTGGGCACACTGCGTCTACACCACTGTGCAAATGTCTTGGACCGTTtaagaaaaaacatgtttaaagctTTTTATCTCAGTACAAATAGGGATTATACAATTTCTAATCAATATTAATACATAAAGTAAATACAACAAGAAAGTAGTATCGTGTACCATAACTTTTGGCACgttcagccctcactacaactcccataattcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233899 True 5082 lncRNA 0.41 2 1904782 1911725

Neighbor

gene id symbol gene type direction distance location
LOC103042387 LOC108410540 coding upstream 137857 1760477 ~ 1766925 (+)
dusp26 dusp26,LOC107720817 coding upstream 151025 1747521 ~ 1753757 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding upstream 185835 1713634 ~ 1718947 (+)
LOC103044833 LOC108410534,LOC108276727 coding upstream 191857 1709405 ~ 1712925 (+)
denr denr,LOC107722339,LOC107706783 coding upstream 195599 1704504 ~ 1709183 (+)
LOC111194965 mrps24 coding downstream 47360 1959085 ~ 1961614 (+)
polm polm coding downstream 62520 1974245 ~ 1981134 (+)
LOC103032544 NA coding downstream 79040 1990765 ~ 1993332 (+)
ddx56 ddx56 coding downstream 97935 2009660 ~ 2018739 (+)
ash2l ash2l,LOC107704134 coding downstream 144640 2056365 ~ 2073303 (+)
G172737 NA non-coding upstream 15186 1888542 ~ 1889596 (+)
G172736 NA non-coding upstream 16318 1885208 ~ 1888464 (+)
G172733 NA non-coding upstream 22747 1865101 ~ 1882035 (+)
G172735 NA non-coding upstream 29635 1874801 ~ 1875147 (+)
G172600 NA non-coding upstream 128181 1773225 ~ 1776601 (+)
G172756 NA non-coding downstream 50996 1962721 ~ 1964604 (+)
G172767 NA non-coding downstream 76266 1987991 ~ 2022820 (+)
G172763 NA non-coding downstream 87664 1999389 ~ 2004425 (+)
G172782 NA non-coding downstream 131000 2042725 ~ 2043939 (+)
G172788 NA non-coding downstream 149373 2061098 ~ 2106334 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 49028 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 54566 1839351 ~ 1850216 (+)
G172552 NA other upstream 275977 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 359826 1383495 ~ 1544956 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 82983 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 806884 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1553408 3465133 ~ 3739736 (+)
G173094 NA other downstream 1828577 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1997217 3908942 ~ 3931991 (+)

Expression


Co-expression Network