G172756


Basic Information

Item Value
gene id G172756
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1962721 ~ 1964604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233916
GGGGGTGGTTAAACTTCCCAatttcacatttattattattctgtaaaattaacatttcctTTAACGCAAAAGTGTGTTCACAATTATAGTGCAAAAGACAAGGCACATATAATTCCatcataatacaaaaaaaaaaaactttgcctAAATGTGACAATTTTCCCCTAAATATCCAACAtaatccatttaaaaaaatccagttaCAAATACAGTGAGAAAGTTTAAAGCTCTGGAGTGTGTTCTCAAATATCTGGAGTGCAGTGGAGCGATGCacatgtaaaagagagagagggaaactatatattcacatttaaataatatttaaaatattcatgtGATATGTGACCGgaaatacagtttatattaaaaatatatataatttaaagctCTCCACCATTTCACAGTTCCTCTGAATGGGTGCAATGTGGTTTtaataatcatgttttaaaatgtaaaaagtgctttaaattgAAATTaaaaaggagtaACCTGCTGTAAAATAGCAGCAATTCAGTGTTGACCGTTAATATTCTACACAAATCTACATATTAAAGCTACAGGTACATTCACATTGGAGGGACCAAGAAAGAACCCATTAACCCGTGAGATGGTATGTTGATTCTGTTtcaaaacaaaattacattaaatttatttaggctatttaaaatatttattccattattaaaaaaaattaaatcattgctctttaaaatggtgtaataatgcattatataatcattatggtattatataattcatattatcagaacagtggcataaaatggtctTACAATCACAACGATATTGTTCgtctaaatttattttttcatctatTATTTCTGTGCTTTTATACTGAATATTATTTAGACTTTTTCAGGATTTTGTCCTGTTTCTGTACCTTcctgattaattattatttcttcctcttttctccctactttaagaaaaaatacagctctggaaaaataagagtccacttaaaaatgatgagtttctttaattttaccaaattaaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaactaagttgaactgcttgaatttagttatccaaaagcagtgtgtaagactggtggatgggaacatgataccaagacgcatttaaaaaactgtgatcaaaaaccaccagggctattccaccaaatattgatttctgaactcttaacactttatgaatatgaacttgtttttttatgtttttattatttgaggtctgaaaattctgcaacttttttttgttaaattcagccatttcccattttctgcaaataaatgctctaaatgacaatattccagagctttttatatatatatatataaaatcttctaaaccaaaatacttatCATGACAGGCCCAACTGGAATGGATATACAGTAAAACTGTGTGATACACAGTTATAAAGGTGTGATAAAGGTGTACACAGTCAtataattaaactgaattaattcaattcaattacaTCGTGACTGTTTGAAGTGTAGCAGCAGTAGCTGTGTGTGAACACACTGTGGCCGCTCTCTGTGATTTATGTGGATCATAGAAGTTGGCCAGCCTTCTCATAAAGTTTAACCCGAGAGACGCTCAGACCCCGAGTCTGAGGCTGGAGATCCGCCGGGTGGTTTATAAGGATCACTTGAGCTCTCGGCAGCTCTTCCCCGCACATGACTGGAGCTTAATGAGCCTCTGGTTCATGGTCTGCAGGAGAGCAGGGTCCACCTTCTTCACGATGTTCTCCAGCTGGTGAGGGTCAGACGTCAGGTTGTAGAACTCCACAAATGA

Function

GO: NA

KEGG:

id description
ko00600 Sphingolipid metabolism
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU233916 True 1823 lncRNA 0.33 2 1962721 1964604

Neighbor

gene id symbol gene type direction distance location
LOC111194965 mrps24 coding upstream 1107 1959085 ~ 1961614 (+)
LOC103042387 LOC108410540 coding upstream 195796 1760477 ~ 1766925 (+)
dusp26 dusp26,LOC107720817 coding upstream 208964 1747521 ~ 1753757 (+)
LOC103043725 bcl7a,LOC108410533,LOC107704131,LOC107706784,LOC107722340,LOC107554537 coding upstream 243774 1713634 ~ 1718947 (+)
LOC103044833 LOC108410534,LOC108276727 coding upstream 249796 1709405 ~ 1712925 (+)
polm polm coding downstream 9641 1974245 ~ 1981134 (+)
LOC103032544 NA coding downstream 26161 1990765 ~ 1993332 (+)
ddx56 ddx56 coding downstream 45056 2009660 ~ 2018739 (+)
ash2l ash2l,LOC107704134 coding downstream 91761 2056365 ~ 2073303 (+)
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding downstream 129958 2094562 ~ 2103944 (+)
G172741 NA non-coding upstream 50996 1904782 ~ 1911725 (+)
G172737 NA non-coding upstream 73125 1888542 ~ 1889596 (+)
G172736 NA non-coding upstream 74257 1885208 ~ 1888464 (+)
G172733 NA non-coding upstream 80686 1865101 ~ 1882035 (+)
G172735 NA non-coding upstream 87574 1874801 ~ 1875147 (+)
G172767 NA non-coding downstream 23387 1987991 ~ 2022820 (+)
G172763 NA non-coding downstream 34785 1999389 ~ 2004425 (+)
G172782 NA non-coding downstream 78121 2042725 ~ 2043939 (+)
G172788 NA non-coding downstream 96494 2061098 ~ 2106334 (+)
G172789 LOC108441067 non-coding downstream 160950 2125554 ~ 2130319 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 106967 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 112505 1839351 ~ 1850216 (+)
G172552 NA other upstream 333916 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 417765 1383495 ~ 1544956 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other downstream 30104 1994708 ~ 1997362 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 754005 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1500529 3465133 ~ 3739736 (+)
G173094 NA other downstream 1775698 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1944338 3908942 ~ 3931991 (+)

Expression


Co-expression Network