G172770 (h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302)


Basic Information

Item Value
gene id G172770
gene name h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 1994708 ~ 1997362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233936
CCCTCCTTAGTAGATCAAAAGCCTAACTACCATTCATGTTAATACTAGGATTACAAAATAACCAGACGAAAGGGTAAAACGTAAAAAACGCGCTTCATGCTGATTGCCGTTaactatacaaacacacacgtaCGACACAATCGCTTCCTACACAGTCTTCTGCTGGCCCTTCTTTCCAATCAGGGACTTGTGAATGTGTGGGATGACaccCCTCCAGCAATCGTGGCTTTGATGAGAGAATCCAACTCTTCATCACCACGAATGGCCAACTGTAAATGCCTTGGAGTGATACGCTTCACCTTCAAGTCCTTTGAAGCGTTACCTGCCAACTCCAACACCTCAGCAGTGAGGTACTCCAGGATGGCTGCACTGTACACTGCTGCTGTGGCACCAACACGTCCATGGCTCGTGGTGCGTGTCTTCAAGTGCCTGTGAATACGACCTACTGGAAACTGCAgaagaaatgattaaaaaaaaaatatatatatcagtcaCCACACTTTTTCAAATAAACAATGGTgtaaatggattttttcttcatcAAACAAATACTGAAaatcaaaaaagtaaataaaaatacacatgcCTGCAGACCAGCCCTCTGGGAGCGGGACACTGCCTTTGCCTTGGCTTTGCCACTGTCCTTCCCAGCCTTTCCTCCTGCCATATCTCCAGAGAGTGGTTTTAAAGGTCAATGGTCAGAATATTTAAGTCAAATCCACTACAGTCACAGAAAGACGGGCAGATAATGCATCGGGCGGTAGGAGGTGCTGAAATGGCGGGAGATATTTTACATAATTGAAgcgatttattttttttacacacccGTATT

Function

NR:

description
PREDICTED: histone H2A.V

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233936 True 832 TUCP 0.44 4 1994708 1997362

Neighbor

gene id symbol gene type direction distance location
LOC103032544 NA coding upstream 1376 1990765 ~ 1993332 (+)
polm polm coding upstream 13574 1974245 ~ 1981134 (+)
LOC111194965 mrps24 coding upstream 33094 1959085 ~ 1961614 (+)
LOC103042387 LOC108410540 coding upstream 227783 1760477 ~ 1766925 (+)
dusp26 dusp26,LOC107720817 coding upstream 240951 1747521 ~ 1753757 (+)
ddx56 ddx56 coding downstream 12298 2009660 ~ 2018739 (+)
ash2l ash2l,LOC107704134 coding downstream 59003 2056365 ~ 2073303 (+)
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding downstream 97200 2094562 ~ 2103944 (+)
pdxp pdxp coding downstream 113626 2110988 ~ 2115322 (+)
LOC103035434 LOC103035434,LOC108441064,LOC108277206,LOC557306,LOC107687378,LOC107568610,LOC107665788 coding downstream 218656 2216018 ~ 2232907 (+)
G172756 NA non-coding upstream 30104 1962721 ~ 1964604 (+)
G172741 NA non-coding upstream 82983 1904782 ~ 1911725 (+)
G172737 NA non-coding upstream 105112 1888542 ~ 1889596 (+)
G172736 NA non-coding upstream 106244 1885208 ~ 1888464 (+)
G172733 NA non-coding upstream 112673 1865101 ~ 1882035 (+)
G172763 NA non-coding downstream 2027 1999389 ~ 2004425 (+)
G172782 NA non-coding downstream 45363 2042725 ~ 2043939 (+)
G172788 NA non-coding downstream 63736 2061098 ~ 2106334 (+)
G172789 LOC108441067 non-coding downstream 128192 2125554 ~ 2130319 (+)
G172800 NA non-coding downstream 141277 2138639 ~ 2227606 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 138954 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 144492 1839351 ~ 1850216 (+)
G172552 NA other upstream 365903 1626799 ~ 1628805 (+)
zswim6 zswim6,LOC108425190,LOC107704169,LOC103369940,LOC107706746,LOC105014808 other upstream 449752 1383495 ~ 1544956 (+)
G172517 NA other upstream 452557 1507320 ~ 1542151 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 721247 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1467771 3465133 ~ 3739736 (+)
G173094 NA other downstream 1742940 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1911580 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 2120672 4118034 ~ 4130482 (+)

Expression


Co-expression Network