G172788


Basic Information

Item Value
gene id G172788
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2061098 ~ 2106334 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233960
caaaaattcaagcagttcagcttggtttgatggcttgtgatcatccatcttcctcttgattatattccagagattttcaatttggtaaaaatcaaagaaaatcataatttttaagtgctctcttatttttttttccagagctgtatgactATGGTTAAAATGTCAGTTTCGTACTTGGTgagaaaagtttattaaacGACTTGCTGTAAAAGGGCTTTTACGCAAATCTGTGAGAAGAGACCTGTCTAATGCTATTTGAGCTtttcccccccacccccacccccctctcTTCCACACCCCTGTTCCCGTTACCGACATGATCAagtatatttacctcagtatggCTTTCCTTCGTGAACTCTTTacgtactctctctctctcatatggCAATAATTTGTAAATATGTACAGACACCAACATAACCTTcccactttctctcttccttGGCAAACAGACTTGAACttgaaaactttaaaatctgTGCTTTTGAGTCTGTAACTTAAGTATTCCACAGAAATGCCTTTACTTGCTTTATTGTTTAGctgattatataaatatatatacatacatacatatatatattttgtttttttgtttcttgtttttagtttttgctttacGAGAGATTCgcttaagaagaagaagaagagttatttatttatttattcactttaaagaaaaaactgcaAGTGGGTGTAGTGTGTTCGATGTTCAGTACATGGCGCgctaagctaggctaagctaagctgtcCTCCGCTGCTGGCCCAGGGCTTTTTGGGAGTTTCTGCGGCGACGCAGCTCCAGCTGAGCATCCTGGTGCTCCCATCTTCACAGAGGAAGCAGTGAAGTAGTTGAatgtacagtattattattattattattattattattattattaataataatattacgtttTATTACGGGGTTTACGAAACTGAACTGAGCGCGTCGTCTGAGGGAACGAATGTTTGCTGGTTAAGGCATGACCCTCTCTGCAGTGTTGCCTTAACACTTGTTGCTTATTcagaattaaaaagaaaaatacaaaaaaaaaaataagttgcatGTTTAAAATCTACctgaaaaagaaacacaaagacAACGGCCTCTGGGAGTGACAAAATAACGGAAACATCTCTCGTTCTGTTTTTGTAGCCCGAGAAAAAAGGTCTTTTATTcctgttttccttctttttcttttcttattccGAGAATTTATAGAAGGCTGGTTAGAGAAAGTGACCTGAGGACGTTTCGCTCTCGCGCTGCGTAAAACCGTTTCCTGTTCCTGAGGCCAGAAATTCTCCATTCTGTTTCTgttcgtttttttgtttttcattacaTACTTGAAGGATGTGTACTGAtaccattttatttaaatacacttaagaaaaagaaacaatattCTCAGATTTTGAGTCGTGTAATTTTGTGCAATTCATTTCTCCTGTCCCTCCAAGGATCGAGCAGAGCTTTAGAAAATTGTGTTGGTGAAGTAACTTATTCATGTCCAAAGTTTGTATGAAAAGTACTAGCTTAAAATTGTTGTAAATGTAGTGATGGTCATTTGCTTCCACAGGcgaaaacgtttttaaaaatgtaaatttgaaaacaagaaaaaaaaaagtttttcggAAGAATgcttaagtaattttttttttccattcgtTCACTTTTTTTGTGCTGGGggataaaagaagaaaacaaaaagcattACAGTCAGAATAAATAATTTTCTTCAACACTTATTTTGGTGTAAAGAAATTCTAGTGTAAAAATAGACAATCAAAAGCAGTAATTACTATTCAAAAAGGAAAATTTTATCATTCATAATGTTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233960 True 1841 lncRNA 0.35 3 2061098 2106334

Neighbor

gene id symbol gene type direction distance location
ddx56 ddx56 coding upstream 42359 2009660 ~ 2018739 (+)
LOC103032544 NA coding upstream 67766 1990765 ~ 1993332 (+)
polm polm coding upstream 79964 1974245 ~ 1981134 (+)
LOC111194965 mrps24 coding upstream 99484 1959085 ~ 1961614 (+)
LOC103042387 LOC108410540 coding upstream 294173 1760477 ~ 1766925 (+)
pdxp pdxp coding downstream 4654 2110988 ~ 2115322 (+)
LOC103035434 LOC103035434,LOC108441064,LOC108277206,LOC557306,LOC107687378,LOC107568610,LOC107665788 coding downstream 109684 2216018 ~ 2232907 (+)
epb41l4a epb41l4a,LOC107653778,LOC107709672,LOC107692020 coding downstream 727907 2834241 ~ 2897371 (+)
LOC103033517 srsf9,LOC107560829 coding downstream 824721 2931055 ~ 2936876 (+)
LOC103030660 LOC108435150,LOC108277167 coding downstream 867423 2973757 ~ 2997663 (+)
G172782 NA non-coding upstream 17159 2042725 ~ 2043939 (+)
G172767 NA non-coding upstream 38278 1987991 ~ 2022820 (+)
G172763 NA non-coding upstream 56673 1999389 ~ 2004425 (+)
G172756 NA non-coding upstream 96494 1962721 ~ 1964604 (+)
G172741 NA non-coding upstream 149373 1904782 ~ 1911725 (+)
G172789 LOC108441067 non-coding downstream 19220 2125554 ~ 2130319 (+)
G172800 NA non-coding downstream 32305 2138639 ~ 2227606 (+)
G172898 NA non-coding downstream 401147 2507481 ~ 2507692 (+)
G172899 NA non-coding downstream 475076 2581410 ~ 2581838 (+)
G172903 NA non-coding downstream 506892 2613226 ~ 2613513 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 63736 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 205344 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 210882 1839351 ~ 1850216 (+)
G172552 NA other upstream 432293 1626799 ~ 1628805 (+)
G172517 NA other upstream 518947 1507320 ~ 1542151 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 612275 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1358799 3465133 ~ 3739736 (+)
G173094 NA other downstream 1633968 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1802608 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 2011700 4118034 ~ 4130482 (+)

Expression


Co-expression Network