G172800


Basic Information

Item Value
gene id G172800
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2138639 ~ 2227606 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU233973
taaaaattacTTACAGAATTAAGTAAcaggtttttaaatgtgtttatacttctaaatgcaaataaaatgaactatctacaatttagaaaaaaaatgcgGTCCAGTAGAAGCCATTTACCTATacgtgaaggagaacatgaaatCTGAACTATACATGTATCTGCGACAATCATCAAATTgcactgttctgtttttttgtttttctttttttacaaaataatcaAAGAGCAACAGCATCTCAAAGGGATCATATTTGGGAATCTGACATTGTGTTGTGCACTAAAACAGGAAAACCCCTGATTTTCTCAATTCCTCAGTCTGATATGTACAAGGCTGAATATCGGATATGTGTAGCGTGAGTGACGTCTCGTACGTGCACTTTGTGCgtttttttgtttccttaatTCTTTCTTTATTATCATCAATTTTACTCCAATCATGTAAGGCTTTTTTCCTTCTTTGACTGTTCTTCGTCAGAATTCCAGAACTATTACAATAACACGTTACGTTACGTACGAATCCGCCTCGCTGCGCTACAGGGTACAAACTACGTTAAAAAGATATGATCCCTCAAATGCTGTGTAACACTGGTACCTTGCCCTTCAAGTTGGCACTCCACATAGAACACCAGTGCATTTGATCCGATAGAGCAtagtagaaaataaaatacttattttctttttttttttaagaaatggggaaaataaaataataataatattcataataaaaaaacaggaaattcaCAATTAGCAACACAACAAACTTTCATTTAGGGaacaaataactgaaataaaaagacGGGTACACATGCATCACACTAACATACAGTTACAACTCTACTCATATCATGCAAAAAGAATGGCCTAGCGTtcgtgtttttgtctttttttttgcgtcattttttttttcttattttgtttttcgaTTTCCCACGTCGACCTGACATCAAACACGGTACAATACTACAGTaggtaaatgtaaagaaaaggcCAATCCGTCGAACATGTCTTTTTCTGAATGTCCGTTTGCATAATGACACGCCCATATGCCACTGATAAGACAGAATCTGTTacgttaaaaaaaagtaaaaaaaaaaaaagaaaaagaaaaatcggTAGCTAACTACACGTAGCTGCAACAGATACTGAGGGTGCAACAGTTCTGTTATTACAAGGCCGGCAGTCTCCTCTCCACTTATAACTAATAGCACACAAACGGCGAGTCCCGAGCTGCAACCGAAGGCGATGATGATGATCCCCCCTCAGCcaaactttttcttttctttactttttttttttactttttggtaAGTTAAGCAGGGCTGCCTGCTTTAAGGTCGTAGGTTCAATACTGGGAgaatggaatatatatatatatatataatatatatatacgaaaAAACAAAGTCACATCAGTTTCACTGTCTACAGGCCACGTTCAGATTGCTGCTTGTGCATATCAAAAAAACGAGACGTAATATTGCTAATGTTAACGTTAAAGTTAACGCTAGCGTCAGGCATTTTTTTGTTCCCTTCGGAGGCAGAGCTTCTACAGGCAGCTGAACCCtgcagcaaaaacacaaaaaaacagaagggTCGAGCTGCAGTGGGCCGAACACTCGCGAACAAGAAGCGTGAGGTAATGAAAAACACATGTGGCTGCGAGAAAaccgtgtgtgtgtgagtgtgttactTTAAACATTGGAACATTCCTAAAGGGGGCCGCAGGTCAATCTTGTACGTAGAGATCCGATGGGATTGGaaacacaaaacattaaaatatcgAAACCAGACAATCGAACAGCGAGGCACGCACATTTACACGTAAAAAAGaagtgagaaataaaaaaagagcaaatcTCAAAAGGCTAATTGTGTAAGAACCATATCGTTACTTATCGTATAAGAGCAGAGAGAGGACAGAGTGGAAAGATTGCAGTTCACTTCCTGAATACTTCTGAATTATTATTGCATCAATTTCCTGTgttattctttttctttagtTCATTTGTCAAATCTGTGGccaaatttttaaaaacttgtTCTCTCGATAAGAGCagataaaaatgctaaaagacaACTTTTTGTCAACGAAAGcaatttttgtttagaaaatatCATGTTAAACACAGGTATCCCTtcatttggaagaaaaaaaaaataaacaaa
>TU233974
atatatatatatatatatatatatatatatataaatatatatacgaaaAAACAAAGTCACATCAGTTTCACTGTCTACAGGCCACGTTCAGATTGCTGCTTGTGCATATCAAAAAAACGAGACGTAATATTGCTAATGTTAACGTTAAAGTTAACGCTAGCGTCAGGCATTTTTTTGTTCCCTTCGGAGGCAGAGCTTCTACAGGCAGCTGAACCCtgcagcaaaaacacaaaaaaacagaagggTCGAGCTGCAGTGGGCCGAACACTCGCGAACAAGAAGCGTGAGGTAATGAAAAACACATGTGGCTGCGAGAAAaccgtatgtgtgtgtgtgtgtgtgtgaGTGAGTGTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233973 True 2171 lncRNA 0.36 2 2184582 2186774
TU233974 False 356 lncRNA 0.40 3 2138639 2227606

Neighbor

gene id symbol gene type direction distance location
pdxp pdxp coding upstream 23317 2110988 ~ 2115322 (+)
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding upstream 34695 2094562 ~ 2103944 (+)
ash2l ash2l,LOC107704134 coding upstream 65336 2056365 ~ 2073303 (+)
ddx56 ddx56 coding upstream 119900 2009660 ~ 2018739 (+)
LOC103032544 NA coding upstream 145307 1990765 ~ 1993332 (+)
epb41l4a epb41l4a,LOC107653778,LOC107709672,LOC107692020 coding downstream 606635 2834241 ~ 2897371 (+)
LOC103033517 srsf9,LOC107560829 coding downstream 703449 2931055 ~ 2936876 (+)
LOC103030660 LOC108435150,LOC108277167 coding downstream 746151 2973757 ~ 2997663 (+)
LOC111195006 LOC108435149,LOC108277169,LOC107679516,LOC107730971,LOC107672600 coding downstream 773627 3001233 ~ 3007009 (+)
LOC103031719 NA coding downstream 824429 3052035 ~ 3062372 (+)
G172789 LOC108441067 non-coding upstream 8320 2125554 ~ 2130319 (+)
G172788 NA non-coding upstream 32305 2061098 ~ 2106334 (+)
G172782 NA non-coding upstream 94700 2042725 ~ 2043939 (+)
G172767 NA non-coding upstream 115819 1987991 ~ 2022820 (+)
G172763 NA non-coding upstream 134214 1999389 ~ 2004425 (+)
G172898 NA non-coding downstream 279875 2507481 ~ 2507692 (+)
G172899 NA non-coding downstream 353804 2581410 ~ 2581838 (+)
G172903 NA non-coding downstream 385620 2613226 ~ 2613513 (+)
G172906 NA non-coding downstream 439764 2667370 ~ 2693131 (+)
G172913 NA non-coding downstream 546937 2774543 ~ 2774836 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 141277 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 282885 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 288423 1839351 ~ 1850216 (+)
G172552 NA other upstream 509834 1626799 ~ 1628805 (+)
G172517 NA other upstream 596488 1507320 ~ 1542151 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 491003 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 1237527 3465133 ~ 3739736 (+)
G173094 NA other downstream 1512696 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1681336 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 1890428 4118034 ~ 4130482 (+)

Expression


Co-expression Network