G172898


Basic Information

Item Value
gene id G172898
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2507481 ~ 2507692 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234113
tATGTCACtgataatgttgtgtgcattgcaatattttgagcagaactgtgctcttaccctgctaattgaaccttcacactctttatgctcttactggtgcaataatgtgcaattaatgaagattgaccaccaggctgctccaatttagccatgaaacctaaaatcccacactaaaatgatgacaggtgtttcagtttcattgtccaaaccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234113 True 212 lncRNA 0.39 1 2507481 2507692

Neighbor

gene id symbol gene type direction distance location
LOC103035434 LOC103035434,LOC108441064,LOC108277206,LOC557306,LOC107687378,LOC107568610,LOC107665788 coding upstream 274574 2216018 ~ 2232907 (+)
pdxp pdxp coding upstream 392159 2110988 ~ 2115322 (+)
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding upstream 403537 2094562 ~ 2103944 (+)
ash2l ash2l,LOC107704134 coding upstream 434178 2056365 ~ 2073303 (+)
ddx56 ddx56 coding upstream 488742 2009660 ~ 2018739 (+)
epb41l4a epb41l4a,LOC107653778,LOC107709672,LOC107692020 coding downstream 326549 2834241 ~ 2897371 (+)
LOC103033517 srsf9,LOC107560829 coding downstream 423363 2931055 ~ 2936876 (+)
LOC103030660 LOC108435150,LOC108277167 coding downstream 466065 2973757 ~ 2997663 (+)
LOC111195006 LOC108435149,LOC108277169,LOC107679516,LOC107730971,LOC107672600 coding downstream 493541 3001233 ~ 3007009 (+)
LOC103031719 NA coding downstream 544343 3052035 ~ 3062372 (+)
G172800 NA non-coding upstream 279875 2138639 ~ 2227606 (+)
G172789 LOC108441067 non-coding upstream 377162 2125554 ~ 2130319 (+)
G172788 NA non-coding upstream 401147 2061098 ~ 2106334 (+)
G172782 NA non-coding upstream 463542 2042725 ~ 2043939 (+)
G172767 NA non-coding upstream 484661 1987991 ~ 2022820 (+)
G172899 NA non-coding downstream 73718 2581410 ~ 2581838 (+)
G172903 NA non-coding downstream 105534 2613226 ~ 2613513 (+)
G172906 NA non-coding downstream 159678 2667370 ~ 2693131 (+)
G172913 NA non-coding downstream 266851 2774543 ~ 2774836 (+)
G172914 NA non-coding downstream 267196 2774888 ~ 2776018 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 510119 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 651727 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 657265 1839351 ~ 1850216 (+)
G172552 NA other upstream 878676 1626799 ~ 1628805 (+)
G172517 NA other upstream 965330 1507320 ~ 1542151 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other downstream 210917 2718609 ~ 2726076 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 957441 3465133 ~ 3739736 (+)
G173094 NA other downstream 1232610 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1401250 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 1610342 4118034 ~ 4130482 (+)

Expression


Co-expression Network