G172914


Basic Information

Item Value
gene id G172914
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2774888 ~ 2776018 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234133
atgcatcAGTAAATTTGCGATAATATGCAAAGCTCTAATACAAATCGATCAAATTTGTGCCTCCGATGTTTTGGTAGTGGTTTGAGAATGAAGTCCTCTGGAGTTCCCGGAACACTGAGTGCCATCTTCACTGAATGCTCTCTCGAAGATTCTCCTCAGAGACAGCTTAACCTTCTCTTTGAAGTCCTGCCCCATGAAGACGTACAGCACCGGGTTCATGCAGCTGTTGACGTACGCCAAAGAGATGGCCAGTGGGTCTACGGTTTTGGCCAGTTCGGAAACTTTTGGAGAACCGTAGACGTCCATCAAGCCTAGCACGTGATACGGCAGCCAGGACAGGAAGAAGGCCACGACGACCACCACCATGATCCGGAACGCTCTTCCGGAGCGGAACTGGCTGCGGCTAACCTTGCGGGCGATGAGGGCGTAGCACGCTGCGATGGAGAGCAGGGGTACCAGGAAGCCCAGCAGGAACCTGACGAGGGTCAATGTTCTGAAGGCTTCGTCTACTTCATGGGATTCGGTCATCTCATAGTCACCACTGCCGGAATGGAACGTGCAAATGGTTACTTCCAGTTCGGTGATTGTAATAACCTTACGAAAAATCATGTTGGGCAAGCTAAGTAACAAGGCCAGGACCCAGGCCAGCCCACAGCAGGCAGCAGCCAATCCTAGACTACGGTTATTCTGAGACCAAACCGGTTTAACGACCTGGACGAAGCGATCCAAGCCGATGAGGTTCAACGTGAAGACGCTGGCGAACATGTTGAGAACGATGACGGCCGGCAGGACCCTGCACATGACGTTCCCGTACGGCCAGTGGTTTTTCATGAGGATGTCGGCTACTGTGAATGGTATAGAGAGGCAGCAGAGGAGGTCAGCAATGGCCAGGTTAAGAAACCAGGTGGTGTTCACCGTCCTCTTCATCTTCAAACCAGCGATCCACACCACCAGGATGTTCCCAGGAACTCCGAGAGCGCAGGTCAGGCAGTAGAAGACCAGTGACACCACACTGAAGGGGTGGTTGTTGTCTTCGTGAGAAGAGACATCGTAGTCTGTGTAATTATAGTCATCCGTTGTAAAATTGTCCGAGTATGACTCGTTATAATCCATTGTATCCATTGTAATCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234133 True 1131 lncRNA 0.51 1 2774888 2776018

Neighbor

gene id symbol gene type direction distance location
LOC103035434 LOC103035434,LOC108441064,LOC108277206,LOC557306,LOC107687378,LOC107568610,LOC107665788 coding upstream 541981 2216018 ~ 2232907 (+)
pdxp pdxp coding upstream 659566 2110988 ~ 2115322 (+)
mier3 mier3,mier3a,LOC108441071,LOC108277354,LOC107568605,LOC107665797 coding upstream 670944 2094562 ~ 2103944 (+)
ash2l ash2l,LOC107704134 coding upstream 701585 2056365 ~ 2073303 (+)
ddx56 ddx56 coding upstream 756149 2009660 ~ 2018739 (+)
epb41l4a epb41l4a,LOC107653778,LOC107709672,LOC107692020 coding downstream 58223 2834241 ~ 2897371 (+)
LOC103033517 srsf9,LOC107560829 coding downstream 155037 2931055 ~ 2936876 (+)
LOC103030660 LOC108435150,LOC108277167 coding downstream 197739 2973757 ~ 2997663 (+)
LOC111195006 LOC108435149,LOC108277169,LOC107679516,LOC107730971,LOC107672600 coding downstream 225215 3001233 ~ 3007009 (+)
LOC103031719 NA coding downstream 276017 3052035 ~ 3062372 (+)
G172913 NA non-coding upstream 52 2774543 ~ 2774836 (+)
G172906 NA non-coding upstream 81757 2667370 ~ 2693131 (+)
G172903 NA non-coding upstream 161375 2613226 ~ 2613513 (+)
G172899 NA non-coding upstream 193050 2581410 ~ 2581838 (+)
G172898 NA non-coding upstream 267196 2507481 ~ 2507692 (+)
LOC103032978 LOC103033194 non-coding downstream 138771 2914789 ~ 2929255 (+)
G173045 NA non-coding downstream 387354 3163372 ~ 3163578 (+)
G173048 NA non-coding downstream 422761 3198779 ~ 3199215 (+)
G173049 NA non-coding downstream 424545 3200563 ~ 3200788 (+)
G173050 NA non-coding downstream 424856 3200874 ~ 3201620 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 48812 2718609 ~ 2726076 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 777526 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 919134 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 924672 1839351 ~ 1850216 (+)
G172552 NA other upstream 1146083 1626799 ~ 1628805 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other downstream 689115 3465133 ~ 3739736 (+)
G173094 NA other downstream 964284 3740302 ~ 3743205 (+)
G173111 LOC108435134,LOC108277016 other downstream 1132924 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 1342016 4118034 ~ 4130482 (+)
G173397 NA other downstream 1967551 4743569 ~ 4744249 (+)

Expression


Co-expression Network