CI01000012_13277959_13281157


Basic Information

Item Value
gene id CI01000012_13277959_13281157
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13277777 ~ 13282518 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_13277959_13281157.mRNA
AAACCGATTCCATCCGGAGTGTTAAAGCGTAAAATGCAACATGGACCTGTCAGCTATACATGAATTGGAAGTCACTTGAGGAAATTAAGATGTTCTAAAGTGAGAACCCAAAATGCATTTAAATTCAGCAAAAGTCATTTAAAATGTTGAGAAATGTTCAGAAAGTAGTAGGACTAATCAGAAAGTGTCTCTTTGGTTTTAGAAATAAAGGATTTAAGACGTCCAGTTGTTTAGACTTTTTTCCCTGTTTTCAAGTTCCTAGAAAGAGCTTTATTATGATAAATTTATACTGAAATTATGTTAAACATTTACTGTGAACAGTAATTCAAAACCGAAATGGATAACGCATTTATATATATTTTTTTCTGACCATACACCTTTCAGATTGCATGGCTTGTTGTGTGACATAATATTACACTATATTATTTTTGAATACATAAAAATATTGTATCTATGCATAAGCAAGATTTACTTTCATAAACCCATTTTTATATTAGGAAATATTCTAGATAAATCAATATTCACATGAGACTTTTTGCTGTTTTACTTTTTGATTACTTGTGCCAAACGGTTTTTCATTTGTAGCATACCGCTCAACACTCTCTCTGTATGGTCCAGTATTCTGTAATTATGTTCATAGTTCACAGGCAGACAGTAAATATGACACTTGGGGTGCAGATGTTTGCCAACAGCACTGTAATCCATTCAGTTATTAATTAGGCAAGCTGGTCCTGTCCCTCTTCCTCCTTTCACTGCCTCACTCTCTCTCTCTCTCTCTCTGCATCTTCTCTCTCCTTCTCCTCTGTGGCTATCTCTCCTTCCCCCTCATATGTGCTTAGCTGCTTGGCTAAGTGTTAGTGTGTGTGTTTGCGAGTGTTTGCACTATCTGTGACTGTCTGTCACAACAGCTTAATCCATCTTGGCAAACTGAGGCAAATGGGAAATCCACTGATTAGTATTCATGGCCGTGACCAAATTTCCCTTCCAACTCTGCCGTCTGCAATGGGAAAACTTATGTTTGTCCTGGATTTTTATTATTTCACATGTCCAATTAACAGAATTCTCTTTACCACTATTTTCATAATGATTACTATCATTTCATGTTGGATTCAGTAGCCAGATCATAACATTACTTGCATATCCTGTTAACATACATTTGTTGTCTGATGTCTTTCCAAAGCAAATATGCAAAGGATATCCAATGTAACTACTGGAGGATAGTAAAAAAACCCTAGATTTGCATAGAAGAGTAGGTGTTCAGAACCATGGACAGGGGTGACAGATCAGCGGTTACTTTACAATGTCCCCCTATTCGATCCTATACACAATAGCTGACATTTGCATGCAGTTTGCTCTTTGCCATGACCAATCCAGATATAGATGGGCGGAGTGAGAGTACAGATTCGGAGTCTGAGGAGAGGAATCCAGTGATGGATCAGGACAAGTACCTGCCAGAGCTCCTTGCCGAGAAGGAGAGCTTGGACCCGTCGTTCGTGCACGCGATGCGCCTTCTCGCTGAAGAGCTAGAAAAGGGTGAGCTGATCATTCAGATTCTGAAGAATTGGAACCTAAAACAGGCTGTGCATTCTCAAAAGGGAAAATGCTACCAGGGCTTTCTGAAGATTAAAAACTCTACACTGTTATGTTTGCTGTACATTTTGGGATATTACAGGAATTTACATCAAATACTTTTCCTCTCAAAGTTTTTGGGTTTAAGAAGAGTTCAGGCAAAGAGTCTCTCACAGCTTAGCTATTTTGGTCCAAAATTTGTCACACCCTTTAAGAGGAAAGTGATTAATATTACAACGGCGATCAATACAAGCGTAACTTATCCTAAACACCAGGCGGCCTGGAAACAACTGACGACTAAGCATTTTAGCTAATGGCCCATGCCTGCTGCGTAACTTGAATGTCTAGACCTCTCTGAAACGGCACAGTTCCAGTGCAATATATCCACTGTGAAAGAACTTGCACAAATTATTTGAATAACTCATTTTAGAATTTTTTTATAATGTGAAAAAAAGAAGCGATACTTATTAAGATATATTTTAGTGCAACAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_13277959_13281157.mRNA True 2065 mRNA 0.38 4 13277777 13282518

Neighbor

gene id symbol gene type direction distance location
CI01000012_13231532_13268248 KHDRBS2 coding downstream 9529 13231532 ~ 13268248 (-)
CI01000012_13085906_13090647 NA coding downstream 187124 13084117 ~ 13090653 (-)
CI01000012_13041401_13060443 PCNXL2 coding downstream 217334 13040652 ~ 13060443 (-)
CI01000012_13015424_13018020 NA coding downstream 258132 13015374 ~ 13019645 (-)
CI01000012_12977279_12978570 NA coding downstream 298960 12977022 ~ 12978817 (-)
CI01000012_13324234_13357963 SORBS1 coding upstream 41291 13323809 ~ 13357963 (-)
CI01000012_13374979_13384349 NA coding upstream 92292 13374810 ~ 13384349 (-)
CI01000012_13459355_13464706 TACR2 coding upstream 176143 13458661 ~ 13465823 (-)
CI01000012_13512129_13512368 NA coding upstream 229562 13512080 ~ 13512368 (-)
CI01000012_13516097_13520943 HNRNPH3 coding upstream 233001 13515519 ~ 13520943 (-)
G77316 NA non-coding downstream 25223 13248531 ~ 13252554 (-)
G77354 NA non-coding downstream 97509 13180040 ~ 13180268 (-)
G77353 NA non-coding downstream 99206 13178327 ~ 13178571 (-)
G77352 NA non-coding downstream 101693 13175847 ~ 13176084 (-)
G77350 NA non-coding downstream 104474 13173063 ~ 13173303 (-)
G77282 NA non-coding upstream 121853 13404371 ~ 13408213 (-)
G77289 NA non-coding upstream 169488 13452006 ~ 13453470 (-)
G77393 NA non-coding upstream 202545 13485063 ~ 13485319 (-)
G77315 NA non-coding upstream 203018 13485536 ~ 13486220 (-)
G77407 NA non-coding upstream 268734 13551252 ~ 13551585 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other downstream 322113 12954446 ~ 12957833 (-)
CI01000012_12079581_12084139 NA other downstream 1193517 12078936 ~ 12084260 (-)
CI01000012_12047175_12052116 NA other downstream 1225570 12046728 ~ 12052541 (-)
G75608 NA other downstream 2656906 10611915 ~ 10620871 (-)
G74982 NA other downstream 3701805 9575648 ~ 9576149 (-)
G77287 NA other upstream 336758 13619276 ~ 13633819 (-)

Expression


Co-expression Network