G173090


Basic Information

Item Value
gene id G173090
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 3861105 ~ 3862194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234358
ctttggtaacactttacttggatggtccattttatggccttgttgaagCTCAACTGACAtccaactaacactgaattgaatgtccattaaatttaacttaaccctatgttgaatgtaaattattcaaaatagaacctaaccctacacctaaccctaaccttaacccttaatcaaccataaaatcaaaccctacacctgaccctaaccttaacccttaatcaaccataaaatcaaaccctacacctaaccctaaccttaacccttaatcaaccataaaatctaaccctaaacccaaccctaaccttaacccttaatcaaccataaaatctaaccctaaacccaaccctaaccttaacccttaatcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234358 True 366 lncRNA 0.36 2 3861105 3862194

Neighbor

gene id symbol gene type direction distance location
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding upstream 671405 3178378 ~ 3189700 (+)
LOC103031084 NA coding upstream 687549 3170196 ~ 3173556 (+)
LOC111195007 LOC108435126 coding upstream 704990 3142848 ~ 3156115 (+)
LOC103030033 NA coding upstream 729469 3125086 ~ 3131636 (+)
LOC103031401 LOC108435143,LOC108276558 coding upstream 736853 3098197 ~ 3124252 (+)
LOC103042678 NA coding downstream 379974 4242168 ~ 4244029 (+)
LOC111195096 NA coding downstream 470679 4332873 ~ 4337695 (+)
ranbp3l NA coding downstream 492740 4354934 ~ 4379352 (+)
LOC103029159 NA coding downstream 520937 4383131 ~ 4389029 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding downstream 575846 4438040 ~ 4444030 (+)
G173079 NA non-coding upstream 481947 3378879 ~ 3379158 (+)
G173050 NA non-coding upstream 659485 3200874 ~ 3201620 (+)
G173049 NA non-coding upstream 660317 3200563 ~ 3200788 (+)
G173048 NA non-coding upstream 661890 3198779 ~ 3199215 (+)
G173045 NA non-coding upstream 697527 3163372 ~ 3163578 (+)
G173119 pdlim5b,LOC108435134,LOC108277016 non-coding downstream 96546 3958740 ~ 4005657 (+)
G173121 NA non-coding downstream 146019 4008213 ~ 4041960 (+)
G173182 NA non-coding downstream 183889 4046083 ~ 4046344 (+)
G173232 NA non-coding downstream 386678 4248872 ~ 4249963 (+)
G173259 NA non-coding downstream 451650 4313844 ~ 4316472 (+)
G173094 NA other upstream 117900 3740302 ~ 3743205 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 121369 3465133 ~ 3739736 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 1135029 2718609 ~ 2726076 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 1863743 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 2005351 1853282 ~ 1855754 (+)
G173111 LOC108435134,LOC108277016 other downstream 46748 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 255840 4118034 ~ 4130482 (+)
G173397 NA other downstream 881375 4743569 ~ 4744249 (+)
ptbp3 ptbp3,LOC106592370 other downstream 938435 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 1241533 5103727 ~ 5152836 (+)

Expression


Co-expression Network