G173094


Basic Information

Item Value
gene id G173094
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 3740302 ~ 3743205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234364
cttggcatcatgttctcctccaccagtcttgcacactgcttttggataactttgtgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattctagaggtttttaatttggtaaaatcaagtaaaatctcttatttttaaatttgtatatgtatatgttttaaagtgttttgaagcccctttaaataaagtgttaccaaaatatcGTACAGCATGATTTAACACTCAGATATTAGTAACAAAATAATTCCAGAAACATCCTTCTGTAATCAGAACACTGATTCTGTGGACTATGTGGAGTCTGTGTTTGGGAATAAGGCAGaacagcattaaaataaaaggaaataaaaattcATTCAGTCGTTTAAATACAAATCCGACAAGAGCGGAACACGAGGCAACAGGAAGTTCTGACatcaaataaatggctttagGTGTGAATGGCTGGTGTCCCCTCCTCACGCTGCGTGTCCTTCACTGTAGCCTGCGTGAGGAGGGTCACGCCAGCGCCAGCAGGGGGCGCACTCTCTCCTCCGCTGTGCTGCTCCTCCTCTGCTGGCCGGGGAGCTTTCACAGAAAGCAGGACGGACGGGTGCCCGGGCCTTGCACGCTCGAGTCCGAGGAGTCCCTTTAGCAGGACAGCGGGCTCTACAGGAGCCGGGCGTCAGAGCCCGGGCTGgagctgcctctctctctctctctgtgtctctcgctcGGAGCTGCCGTGGGCCTCCCTCACAGCTTAATGTCCTGTGACTCGGACATCTTGGCCAGAGTCTTCTTCACCCTCAGGGCAGTGAGGCGTGAGGCCGGGTTGTGTGCCCAGCATTCAGTCATCAGCTTGCCCATCTGCCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234364 True 906 TUCP 0.48 2 3740302 3743205

Neighbor

gene id symbol gene type direction distance location
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding upstream 550602 3178378 ~ 3189700 (+)
LOC103031084 NA coding upstream 566746 3170196 ~ 3173556 (+)
LOC111195007 LOC108435126 coding upstream 584187 3142848 ~ 3156115 (+)
LOC103030033 NA coding upstream 608666 3125086 ~ 3131636 (+)
LOC103031401 LOC108435143,LOC108276558 coding upstream 616050 3098197 ~ 3124252 (+)
LOC103042678 NA coding downstream 498963 4242168 ~ 4244029 (+)
LOC111195096 NA coding downstream 589668 4332873 ~ 4337695 (+)
ranbp3l NA coding downstream 611729 4354934 ~ 4379352 (+)
LOC103029159 NA coding downstream 639926 4383131 ~ 4389029 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding downstream 694835 4438040 ~ 4444030 (+)
G173079 NA non-coding upstream 361144 3378879 ~ 3379158 (+)
G173050 NA non-coding upstream 538682 3200874 ~ 3201620 (+)
G173049 NA non-coding upstream 539514 3200563 ~ 3200788 (+)
G173048 NA non-coding upstream 541087 3198779 ~ 3199215 (+)
G173045 NA non-coding upstream 576724 3163372 ~ 3163578 (+)
G173090 NA non-coding downstream 117900 3861105 ~ 3862194 (+)
G173119 pdlim5b,LOC108435134,LOC108277016 non-coding downstream 215535 3958740 ~ 4005657 (+)
G173121 NA non-coding downstream 265008 4008213 ~ 4041960 (+)
G173182 NA non-coding downstream 302878 4046083 ~ 4046344 (+)
G173232 NA non-coding downstream 505667 4248872 ~ 4249963 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 566 3465133 ~ 3739736 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 1014226 2718609 ~ 2726076 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 1742940 1994708 ~ 1997362 (+)
G172725 ogdh,LOC107554543,LOC107714098,LOC107656768 other upstream 1884548 1853282 ~ 1855754 (+)
LOC103041266 NA other upstream 1890086 1839351 ~ 1850216 (+)
G173111 LOC108435134,LOC108277016 other downstream 165737 3908942 ~ 3931991 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 374829 4118034 ~ 4130482 (+)
G173397 NA other downstream 1000364 4743569 ~ 4744249 (+)
ptbp3 ptbp3,LOC106592370 other downstream 1057424 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 1360522 5103727 ~ 5152836 (+)

Expression


Co-expression Network