G173119 (pdlim5b,LOC108435134,LOC108277016)


Basic Information

Item Value
gene id G173119
gene name pdlim5b,LOC108435134,LOC108277016
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 3958740 ~ 4005657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234399
gtttgtgtgtgtgtgtgtgtgtgtgagtgagggtgTGGTAGGGTACCTCTGCaggttgaggttgaggttgCCCGTGCAGGCTTTGATCTTGTTCTGCGCCTCCAAGTGGGTCATGCTGTCTGTGGAGATGCCGTCAATGGAGAGCACGACGTCCCCCACGCTGATCTTCGCTTTGGCCGCCTTCCCTCCATCCGTCAATCTAGAGACGGTGAGGGGCATGCTGAAGTCCTTGCCCCCTTGCAGTCTGAAGCCCCAGGGGGAAGGCCCGATCAGGGACACGCTGTAATGGCTGCTCATGGTTCTCTGGAGGCACTGCTGATGTGAACAAAAGCGGGATCAAACTCTTCCAAAAGGAACCTCTCACAatCTTCACTCCGGACTCTCTCCGCCGCTCGCTCGAACACAACTGACTGAAACTTCCACACTTCGCT

Function

symbol description
pdlim5b Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in digestive system; epidermis; musculature system; and periderm. Orthologous to human PDLIM5 (PDZ and LIM domain 5).

NR:

description
PREDICTED: PDZ and LIM domain protein 5-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234399 True 431 lncRNA 0.56 3 3958740 4005657

Neighbor

gene id symbol gene type direction distance location
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding upstream 769040 3178378 ~ 3189700 (+)
LOC103031084 NA coding upstream 785184 3170196 ~ 3173556 (+)
LOC111195007 LOC108435126 coding upstream 802625 3142848 ~ 3156115 (+)
LOC103030033 NA coding upstream 827104 3125086 ~ 3131636 (+)
LOC103031401 LOC108435143,LOC108276558 coding upstream 834488 3098197 ~ 3124252 (+)
LOC103042678 NA coding downstream 236511 4242168 ~ 4244029 (+)
LOC111195096 NA coding downstream 327216 4332873 ~ 4337695 (+)
ranbp3l NA coding downstream 349277 4354934 ~ 4379352 (+)
LOC103029159 NA coding downstream 377474 4383131 ~ 4389029 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding downstream 432383 4438040 ~ 4444030 (+)
G173090 NA non-coding upstream 96546 3861105 ~ 3862194 (+)
G173079 NA non-coding upstream 579582 3378879 ~ 3379158 (+)
G173050 NA non-coding upstream 757120 3200874 ~ 3201620 (+)
G173049 NA non-coding upstream 757952 3200563 ~ 3200788 (+)
G173048 NA non-coding upstream 759525 3198779 ~ 3199215 (+)
G173121 NA non-coding downstream 2556 4008213 ~ 4041960 (+)
G173182 NA non-coding downstream 40426 4046083 ~ 4046344 (+)
G173232 NA non-coding downstream 243215 4248872 ~ 4249963 (+)
G173259 NA non-coding downstream 308187 4313844 ~ 4316472 (+)
G173268 NA non-coding downstream 387417 4393074 ~ 4400580 (+)
G173111 LOC108435134,LOC108277016 other upstream 26749 3908942 ~ 3931991 (+)
G173094 NA other upstream 215535 3740302 ~ 3743205 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 219004 3465133 ~ 3739736 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 1232664 2718609 ~ 2726076 (+)
G172770 h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 other upstream 1961378 1994708 ~ 1997362 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other downstream 112377 4118034 ~ 4130482 (+)
G173397 NA other downstream 737912 4743569 ~ 4744249 (+)
ptbp3 ptbp3,LOC106592370 other downstream 794972 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 1098070 5103727 ~ 5152836 (+)
G173501 NA other downstream 1177834 5183491 ~ 5183777 (+)

Expression


Co-expression Network