Item | Value |
---|---|
gene id | gdnf |
gene name | gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 |
gene type | misc |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035916.1 |
NCBI id | CM008319.1 |
chromosome length | 36262418 |
location | 4118034 ~ 4130482 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
gdnf | Enables protein homodimerization activity. Involved in several processes, including negative regulation of apoptotic process; positive regulation of morphogenesis of an epithelium; and regulation of RNA metabolic process. Acts upstream of or within several processes, including neural crest cell migration; neuron projection development; and positive regulation of cell population proliferation. Located in Golgi apparatus and extracellular region. Implicated in Hirschsprung's disease; Parkinsonism; congenital central hypoventilation syndrome; epilepsy; and pheochromocytoma. Biomarker of acoustic neuroma; autoimmune disease (multiple); neurodegenerative disease (multiple); pancreatic cancer; and vasculitis (multiple). |
description |
---|
glial cell line-derived neurotrophic factor |
id | name | namespace |
---|---|---|
GO:0021784 | postganglionic parasympathetic fiber development | biological_process |
GO:0048484 | enteric nervous system development | biological_process |
GO:0048485 | sympathetic nervous system development | biological_process |
GO:0072107 | positive regulation of ureteric bud formation | biological_process |
GO:0001755 | neural crest cell migration | biological_process |
GO:0030432 | peristalsis | biological_process |
GO:0048255 | mRNA stabilization | biological_process |
GO:0051584 | regulation of dopamine uptake involved in synaptic transmission | biological_process |
GO:0032770 | positive regulation of monooxygenase activity | biological_process |
GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
GO:0090190 | positive regulation of branching involved in ureteric bud morphogenesis | biological_process |
GO:0001656 | metanephros development | biological_process |
GO:0031175 | neuron projection development | biological_process |
GO:0043524 | negative regulation of neuron apoptotic process | biological_process |
GO:0005576 | extracellular region | cellular_component |
GO:0042803 | protein homodimerization activity | molecular_function |
GO:0008083 | growth factor activity | molecular_function |
id | description |
---|---|
K05452 | GDNF; glial cell derived neurotrophic factor |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU234481 | False | 921 | lncRNA | 0.43 | 2 | 4129515 | 4130482 |
TU234482 | False | 622 | lncRNA | 0.50 | 1 | 4127309 | 4127930 |
XM_007244797.3 | True | 3723 | mRNA | 0.45 | 3 | 4118034 | 4130469 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC103029394 | smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 | coding | upstream | 928334 | 3178378 ~ 3189700 (+) |
LOC103031084 | NA | coding | upstream | 944478 | 3170196 ~ 3173556 (+) |
LOC111195007 | LOC108435126 | coding | upstream | 961919 | 3142848 ~ 3156115 (+) |
LOC103030033 | NA | coding | upstream | 986398 | 3125086 ~ 3131636 (+) |
LOC103031401 | LOC108435143,LOC108276558 | coding | upstream | 993782 | 3098197 ~ 3124252 (+) |
LOC103042678 | NA | coding | downstream | 111686 | 4242168 ~ 4244029 (+) |
LOC111195096 | NA | coding | downstream | 202391 | 4332873 ~ 4337695 (+) |
ranbp3l | NA | coding | downstream | 224452 | 4354934 ~ 4379352 (+) |
LOC103029159 | NA | coding | downstream | 252649 | 4383131 ~ 4389029 (+) |
LOC103026990 | ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 | coding | downstream | 307558 | 4438040 ~ 4444030 (+) |
G173182 | NA | non-coding | upstream | 71690 | 4046083 ~ 4046344 (+) |
G173121 | NA | non-coding | upstream | 76074 | 4008213 ~ 4041960 (+) |
G173119 | pdlim5b,LOC108435134,LOC108277016 | non-coding | upstream | 112377 | 3958740 ~ 4005657 (+) |
G173090 | NA | non-coding | upstream | 255840 | 3861105 ~ 3862194 (+) |
G173079 | NA | non-coding | upstream | 738876 | 3378879 ~ 3379158 (+) |
G173232 | NA | non-coding | downstream | 118390 | 4248872 ~ 4249963 (+) |
G173259 | NA | non-coding | downstream | 183362 | 4313844 ~ 4316472 (+) |
G173268 | NA | non-coding | downstream | 262592 | 4393074 ~ 4400580 (+) |
G173270 | NA | non-coding | downstream | 271554 | 4402036 ~ 4476650 (+) |
G173272 | rsf1b.1,LOC108277234,LOC107697440 | non-coding | downstream | 278470 | 4408952 ~ 4410779 (+) |
G173111 | LOC108435134,LOC108277016 | other | upstream | 186043 | 3908942 ~ 3931991 (+) |
G173094 | NA | other | upstream | 374829 | 3740302 ~ 3743205 (+) |
unc5c | unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 | other | upstream | 378298 | 3465133 ~ 3739736 (+) |
LOC103031931 | LOC103031931,LOC108435131,LOC104953549 | other | upstream | 1391958 | 2718609 ~ 2726076 (+) |
G172770 | h2afvb,h2afva,LOC107386217,LOC105007341,LOC107668744,LOC107599604,LOC103039302 | other | upstream | 2120672 | 1994708 ~ 1997362 (+) |
G173397 | NA | other | downstream | 613087 | 4743569 ~ 4744249 (+) |
ptbp3 | ptbp3,LOC106592370 | other | downstream | 670147 | 4800629 ~ 4904202 (+) |
nrarp | nrarp,nrarpa | other | downstream | 973245 | 5103727 ~ 5152836 (+) |
G173501 | NA | other | downstream | 1053009 | 5183491 ~ 5183777 (+) |
LOC103041160 | NA | other | downstream | 2405845 | 6536327 ~ 6541379 (+) |