G173232


Basic Information

Item Value
gene id G173232
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4248872 ~ 4249963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234530
ACTCACTCaagcatttatataaaaaaaaatatttttaaaaaggtatcCAATATAGTCCTCATTCACCTCATTTCAGCTCAAACCAAcgtgatgtttttgttttaaattttaaatattgacGCTAGTTGGCCACATgaccacaaataaaaaagaaaatctgcgAGATCAGAGTACACTAGTAGTGACAGCGAATTACAAACAACCTGAACCCTCAATGGCAGATATTTGGAGCAGTAGAGGTAGCTCTAGAATTACATCCCATCTCCAGAAGTGCTTACAATTCATTTCACTAGCATGGTCCAACTGGACTTAATGTAAACACATGATGAAAAATTAAGTAGTAATTCCAATCAATATGGAATCGTCAAAAATGAGCTTACCAATGAAAGCACAATTTGAAACCGCTCCATTCATCTATCAGATGATTGAGTCTGCTGGTCTACTGGGAAATAATTCAACATTTCTCCtgcaaaatgttaatattaaagcCTTtgaaacacaatgaaaatcactAAGACCCCATCTCTCTCATGTACAGCACCTTTGAGAACAAATATTATGGCACCCTAATCTCTGTATGCTTTAACATACATTAAGTATAGATGTATAAAAGATTTCAGGCAtcaagagagaaagatgaatgtATAGATCAGAATCTGTATATGAGGTTGCATAAATGTTTTGAGTGCTTTGACTTGTCTTTTAATCCCTTGGCTTTTTCTGCTTTTGACCACCTTTAAATTGTTATCAGGAAGAAAAATGAGGCAAAACAGTCCATTCACAGACACTCATGTTTGGTCTCCGCTCATTAGTCTCAGTGCAGTTTCTCTAGTTTGGCTTGCAGAGATTTGAAGTTGCGAATTATCTCCTGCAGGGCAGCATTGGGGCTTAGAGACTGAAGTTCCACCAGATAGCCACAGATGTTGTCCAAACATACATTAGTGAACCTCCGtctaaaaggaaaagaaaaacaaagggTAAGGATCATTTTGGCACACAGCTATAGGATTTAGATCTATAACTGGAGAGAAATTAGTCTGAAGTGACCCAAATTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234530 True 1057 lncRNA 0.36 2 4248872 4249963

Neighbor

gene id symbol gene type direction distance location
LOC103042678 NA coding upstream 4843 4242168 ~ 4244029 (+)
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding upstream 1059172 3178378 ~ 3189700 (+)
LOC103031084 NA coding upstream 1075316 3170196 ~ 3173556 (+)
LOC111195007 LOC108435126 coding upstream 1092757 3142848 ~ 3156115 (+)
LOC103030033 NA coding upstream 1117236 3125086 ~ 3131636 (+)
LOC111195096 NA coding downstream 82910 4332873 ~ 4337695 (+)
ranbp3l NA coding downstream 104971 4354934 ~ 4379352 (+)
LOC103029159 NA coding downstream 133168 4383131 ~ 4389029 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding downstream 188077 4438040 ~ 4444030 (+)
ucp2 ucp2,ucp2b,LOC106567822 coding downstream 202291 4452254 ~ 4457565 (+)
G173182 NA non-coding upstream 202528 4046083 ~ 4046344 (+)
G173121 NA non-coding upstream 206912 4008213 ~ 4041960 (+)
G173119 pdlim5b,LOC108435134,LOC108277016 non-coding upstream 243215 3958740 ~ 4005657 (+)
G173090 NA non-coding upstream 386678 3861105 ~ 3862194 (+)
G173079 NA non-coding upstream 869714 3378879 ~ 3379158 (+)
G173259 NA non-coding downstream 63881 4313844 ~ 4316472 (+)
G173268 NA non-coding downstream 143111 4393074 ~ 4400580 (+)
G173270 NA non-coding downstream 152073 4402036 ~ 4476650 (+)
G173272 rsf1b.1,LOC108277234,LOC107697440 non-coding downstream 158989 4408952 ~ 4410779 (+)
G173278 NA non-coding downstream 202906 4452869 ~ 4490753 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other upstream 118390 4118034 ~ 4130482 (+)
G173111 LOC108435134,LOC108277016 other upstream 316881 3908942 ~ 3931991 (+)
G173094 NA other upstream 505667 3740302 ~ 3743205 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 509136 3465133 ~ 3739736 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 1522796 2718609 ~ 2726076 (+)
G173397 NA other downstream 493606 4743569 ~ 4744249 (+)
ptbp3 ptbp3,LOC106592370 other downstream 550666 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 853764 5103727 ~ 5152836 (+)
G173501 NA other downstream 933528 5183491 ~ 5183777 (+)
LOC103041160 NA other downstream 2286364 6536327 ~ 6541379 (+)

Expression


Co-expression Network