G173268


Basic Information

Item Value
gene id G173268
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4393074 ~ 4400580 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234575
caaAAAAAATTAGTACAAACTGCTCCTGGTCAGTAGAAAAACAAGGTCAATACAAAAGTTACACAGAACACAAAACATAACGATCTGCTTCGTCGCTTCTGTCTTCAgagggatggggggggggggggcgtggaGGAAGGGGTTAGCCGTCAAGTGTGCAAAAGTTTAGTCTAGTAACATTCATAGCGCCCAGTGCTTTGGCTTCTGTTACAATTCAGCCTTTTCCTCCACTGCCCCGTTCCAGCTCCTTTTCAAGTGCTTCTggcaagagaaaacaagaggcGCTCTGTTCCGTCAGTGGTCAACATCAGCATCATCAAACTGCCCCGAGACTCCAAGAGCTGAATTTGTCTTCGACTCatCATTAACTCCAACTGCCGTGTCCTCGGTTCTGACTCCAGCCATGCAGCGCTGTGGGGCTGAGGACTGAGCCAGCATGCCCTCCAGCCTCTCCAGCGTGGCCTGGCCCTCCACAGTCAGCTGAGACATGCCCTCCTCAAAAGAGTAATACGTGGGCAAATCGATCTGGCCTTGTTCTGCCTCCTCGACATCATACTCGTCCCCATCGAAATCAGAGTCAGAGTCATCGGGATCGGGGTGCAGGGCTTGACATTCAGACATTGCTGAAAACATGGTCTCCaAAGAGCCTTTATCACTAGGAACAAAACGGATTTCCGTGACGAGACTTATTGAATCCTCTGCATCGCTGTCGTCATCctcatcatcttcttcttcttcatcatcatcatcatcgtcgtcGTCATCTTCCTCGTCATCACCGCCGCTGCCATCCCCTTTACCCTTGGCCTTTTGCTCCTCAATCTTGGAATTTGTTTGCTTGGAGTTCACCATCACGTACAGATGTTCTTCAGGGTAGGCACTCAGGTCTCGGGAGATGGCGTGGAGGCTGATGGACGGATAATCCAGAGAAAAGCCCAACCCAGAGCCATCGAACCACGACACacgaGACTCCGCAACGCACAGAGTTCCGGACCCGAGCCCTTTCCCGTCCAGAACCGCGGTGATCTCAGCCTGCTCGTGTTTCACTCCTTCACTCGGAGGAGACACGGtctggagcaccaccattctcCCGCTCTCTGAGCGCTTTAAACTCCTGTAACCCGGGATGAAGTGCTGTGCGGATCTGCGCAGTTAAACCAGGCTCAGTGCTGGACAGACCCGGGCTCCTCAGCGTGGCTGTAGCCGGGTTAAAGCTGCTGCATGGCCGGATGTGCTGGATCAGATGCCGCTGCTGAGGATCTGCTGCTCCACAGCCTGA

Function

GO: NA

KEGG:

id description
ko04115 p53 signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU234575 True 1279 lncRNA 0.53 7 4393074 4400580

Neighbor

gene id symbol gene type direction distance location
LOC103029159 NA coding upstream 4045 4383131 ~ 4389029 (+)
ranbp3l NA coding upstream 13722 4354934 ~ 4379352 (+)
LOC111195096 NA coding upstream 55379 4332873 ~ 4337695 (+)
LOC103042678 NA coding upstream 149045 4242168 ~ 4244029 (+)
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding upstream 1203374 3178378 ~ 3189700 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding downstream 37460 4438040 ~ 4444030 (+)
ucp2 ucp2,ucp2b,LOC106567822 coding downstream 51674 4452254 ~ 4457565 (+)
rab6a rab6a,LOC106603351,LOC107741150 coding downstream 68512 4469092 ~ 4487880 (+)
LOC103024425 fam168a,LOC108433286,LOC108277059,LOC107600264,LOC107594362,LOC105011043 coding downstream 102538 4503118 ~ 4525930 (+)
LOC103024108 LOC108433287,LOC108276817 coding downstream 126991 4527571 ~ 4562681 (+)
G173259 NA non-coding upstream 76602 4313844 ~ 4316472 (+)
G173232 NA non-coding upstream 143111 4248872 ~ 4249963 (+)
G173182 NA non-coding upstream 346730 4046083 ~ 4046344 (+)
G173121 NA non-coding upstream 351114 4008213 ~ 4041960 (+)
G173119 pdlim5b,LOC108435134,LOC108277016 non-coding upstream 387417 3958740 ~ 4005657 (+)
G173270 NA non-coding downstream 1456 4402036 ~ 4476650 (+)
G173272 rsf1b.1,LOC108277234,LOC107697440 non-coding downstream 8372 4408952 ~ 4410779 (+)
G173278 NA non-coding downstream 52289 4452869 ~ 4490753 (+)
G173279 mrpl48 non-coding downstream 62850 4463430 ~ 4466951 (+)
G173288 NA non-coding downstream 106011 4506591 ~ 4507032 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other upstream 262592 4118034 ~ 4130482 (+)
G173111 LOC108435134,LOC108277016 other upstream 461083 3908942 ~ 3931991 (+)
G173094 NA other upstream 649869 3740302 ~ 3743205 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 653338 3465133 ~ 3739736 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 1666998 2718609 ~ 2726076 (+)
G173397 NA other downstream 342989 4743569 ~ 4744249 (+)
ptbp3 ptbp3,LOC106592370 other downstream 400049 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 703147 5103727 ~ 5152836 (+)
G173501 NA other downstream 782911 5183491 ~ 5183777 (+)
LOC103041160 NA other downstream 2135747 6536327 ~ 6541379 (+)

Expression


Co-expression Network