G173272 (rsf1b.1,LOC108277234,LOC107697440)


Basic Information

Item Value
gene id G173272
gene name rsf1b.1,LOC108277234,LOC107697440
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4408952 ~ 4410779 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234583
CTAGCGGCGTTCGCCTGGACGACATGCGTTTGGCTGGACCACAGCCATCACTGCCAAAGTCACTATCATCAAACGACTGGCCCTCTGCTTCGCTCTCTGCGTTACCAGACGCGACAAACTCCTCCTCACTGCTTTCACTGAGGCGGAACTCGTCCTcactctcctcttcctccacaGTGCTGTCACTGTCCAGGTCGTTGAGGCGCCGCCGCTTTTTTCTCCGCTGAACTGTGCTGGTCCTCTGGGGCCGCCCGTTCTCCTTTCCTTCTTCCTGTAAGATGGTGGACATGTCCTTCCCTCGGTGGCCTGTGATATTGGCCATGTCCTTTCCTCGACCCGCTCCTCCTCCTTCTGCTTCTTTAATGTCTTCTTCAATTGCTTCCTCAATCGCTTCATCAAACTCATCAAACCTGTAGCTAATATATTTCTTTGCTCGTGTTGATCTTCGACCCCAGGACTTGACTTTCTTGACCTCCTTCTTTTCCTTCACCTtgtcttcctcttctttttcttcttctggttcaacAGAAGGTGTGATTATGTTCTCAACGCTGATCCCAACATAAACCAGGCGCTCTTTCCTTCTCTCCGCCCGTTCCTTCTTCTTAAGCGCTGCATCAATATTAACCA

Function

symbol description
rsf1b.1 Predicted to enable histone binding activity and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RSF complex. Orthologous to human RSF1 (remodeling and spacing factor 1).

NR:

description
remodeling and spacing factor 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234583 True 630 lncRNA 0.51 6 4408952 4410779

Neighbor

gene id symbol gene type direction distance location
LOC103029159 NA coding upstream 19923 4383131 ~ 4389029 (+)
ranbp3l NA coding upstream 29600 4354934 ~ 4379352 (+)
LOC111195096 NA coding upstream 71257 4332873 ~ 4337695 (+)
LOC103042678 NA coding upstream 164923 4242168 ~ 4244029 (+)
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding upstream 1219252 3178378 ~ 3189700 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding downstream 27261 4438040 ~ 4444030 (+)
ucp2 ucp2,ucp2b,LOC106567822 coding downstream 41475 4452254 ~ 4457565 (+)
rab6a rab6a,LOC106603351,LOC107741150 coding downstream 58313 4469092 ~ 4487880 (+)
LOC103024425 fam168a,LOC108433286,LOC108277059,LOC107600264,LOC107594362,LOC105011043 coding downstream 92339 4503118 ~ 4525930 (+)
LOC103024108 LOC108433287,LOC108276817 coding downstream 116792 4527571 ~ 4562681 (+)
G173268 NA non-coding upstream 8372 4393074 ~ 4400580 (+)
G173259 NA non-coding upstream 92480 4313844 ~ 4316472 (+)
G173232 NA non-coding upstream 158989 4248872 ~ 4249963 (+)
G173182 NA non-coding upstream 362608 4046083 ~ 4046344 (+)
G173121 NA non-coding upstream 366992 4008213 ~ 4041960 (+)
G173278 NA non-coding downstream 42090 4452869 ~ 4490753 (+)
G173279 mrpl48 non-coding downstream 52651 4463430 ~ 4466951 (+)
G173288 NA non-coding downstream 95812 4506591 ~ 4507032 (+)
G173292 LOC108433289,LOC108276818 non-coding downstream 157289 4568068 ~ 4571221 (+)
G173380 NA non-coding downstream 282066 4692845 ~ 4693060 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other upstream 278470 4118034 ~ 4130482 (+)
G173111 LOC108435134,LOC108277016 other upstream 476961 3908942 ~ 3931991 (+)
G173094 NA other upstream 665747 3740302 ~ 3743205 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 669216 3465133 ~ 3739736 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 1682876 2718609 ~ 2726076 (+)
G173397 NA other downstream 332790 4743569 ~ 4744249 (+)
ptbp3 ptbp3,LOC106592370 other downstream 389850 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 692948 5103727 ~ 5152836 (+)
G173501 NA other downstream 772712 5183491 ~ 5183777 (+)
LOC103041160 NA other downstream 2125548 6536327 ~ 6541379 (+)

Expression


Co-expression Network