G173401 (mrpl49,LOC107580894)


Basic Information

Item Value
gene id G173401
gene name mrpl49,LOC107580894
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4755143 ~ 4757691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU234783
tacattacaaaaacaaGTGAGAAATATTCACCTTTGCTCCACTGGCAGATCAGCTGGTATTAACTGTAGGGGTGGACAGTGCAATTACTGTGAGAAGTGAACCACAATAAACATTACTGACTAAATGGCTGATACGGTCAGCACTTAATGAGCATAATTAACTCTAATCAGATTTAATGCACCTCAGCATCCAgatttcattaaaatatatatatttacattgttaaatgTGGCACTGCAAGTAATAAACATGTCGGAATTCTCCTCATACagttttagccatttttttgtCCATCCTAAATTACCAGTAAACACAACATTGCAGATTTTCAGCACTTTAAAACCCCTTTTTCACCAGCCACTCCTTCAGCTCTGTGTCAAACTCCCCTTTAATGCGAATGCTCCCGGTGACTTCATTAACTTGTGTTGGTGGCTCTCTGCCAGTCAGCTGCTGCAGATACTTCTTTACATCTTTATCCAAAGCCCAGATGTCTCCTTCCACTTTTCGTACAATAGTGCTCTTCTGGTTTCCATGTTTGATATCTGAGTAGACAGGAACATTGTGCATTCTGGAGCGTCGGATCATGTATGGCAGATTTGGTGGTGtctCTGATGGAGGGGTCCATCCTGATGGTGTAGGCCCTTCATGTTTAGGTGGGGTAGGGACCCGTGTCGGGGGAATCAGCCTCTCCACGAATTTATACTCCTCTGTAGATTCAACTACTTTTCCCTTTCCACCAACATTGCTGTGCTCTgactgaaaaacagataaacaatcATAACGGAGAACATGGAGAAACCGAACAACCAGGGCACTGAACATGTCCATAAGCGCTTTTttcattacataaataaatataaatcacatCGATCTACCTACAATGATTGCCAGCCTAAAGAAAACTCATCCACATGGTCTTTGTTTCAGCACTTAATATGATTTTACGTGTAAAATCATATTAtatcaataattaaaaatgtcctCAATCGGTTATCGAGGCACACAAACATTTTTCTATTTgaattttccgttccaccttaaatgctgcagcaggAACATTTTAAGGTAGAACAGATCTCGAGTTTTACCGGACAAGCGGCACAACAACCACACAACATAATATGCATGTAAGTTATAAAATCTAACTCACCTGCACACAGGCTCCAACATTAACCACATATCTAACTGGAAGGCCAATTCTTCTTCTAAAGGAACACCCCGGACTCAAAGTCATAAGCACGCTTCTAAAGGACGCCGCCATCTTTCCCGACTCACGCTGAGAGAGAGCGGATTTTATTTCTCACCCGTTTTCATACAGACCCAGACATGTTGGAATACGGGTGGGAAAACACCGAAACGACACAGAttagttactttttattaaactcgtatacacatatttatatagtaaataaaggTGAAGTCTTTACTTCACCAAAAACACCACTTGTCCAGgatatttctgttttctttctaaaatgagtttttagccGTTGAGTTCCATTCACCTCGGATCATTGAGGactcactcgcgggctccctctggCGTttgttttgtgcattatggaacCAGACGCTACAAACTTACAAATCATGAGGTTTTTGTTGGATTTTATCAAcatgttatttaaaatatgttgttcaAATGAGTATCTTAGATTTGGTAATGAATATTTCAGTCTCTCTCCATTCAAACAGACAGGAGGGTCTTGTATATGCG

Function

symbol description
mrpl49 Orthologous to human MRPL49 (mitochondrial ribosomal protein L49).

NR:

description
39S ribosomal protein L49, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234783 True 1721 lncRNA 0.40 3 4755143 4757691

Neighbor

gene id symbol gene type direction distance location
LOC103024108 LOC108433287,LOC108276817 coding upstream 192462 4527571 ~ 4562681 (+)
LOC103024425 fam168a,LOC108433286,LOC108277059,LOC107600264,LOC107594362,LOC105011043 coding upstream 229213 4503118 ~ 4525930 (+)
rab6a rab6a,LOC106603351,LOC107741150 coding upstream 267263 4469092 ~ 4487880 (+)
ucp2 ucp2,ucp2b,LOC106567822 coding upstream 297578 4452254 ~ 4457565 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding upstream 311113 4438040 ~ 4444030 (+)
ak3 ak3,LOC107658667,LOC107744244,LOC107685112,LOC107713310 coding downstream 254276 5011967 ~ 5026274 (+)
exd3 NA coding downstream 284846 5042537 ~ 5135658 (+)
dbh dbh coding downstream 613253 5370944 ~ 5409080 (+)
LOC103039720 strbp,LOC107686417 coding downstream 1017530 5775221 ~ 5939684 (+)
LOC111195010 LOC107702182 coding downstream 1454325 6212016 ~ 6218718 (+)
G173383 NA non-coding upstream 43962 4710111 ~ 4711181 (+)
G173380 NA non-coding upstream 62083 4692845 ~ 4693060 (+)
G173292 LOC108433289,LOC108276818 non-coding upstream 183922 4568068 ~ 4571221 (+)
G173288 NA non-coding upstream 248111 4506591 ~ 4507032 (+)
G173279 mrpl48 non-coding upstream 288192 4463430 ~ 4466951 (+)
G173384 NA non-coding downstream 16027 4773718 ~ 4792216 (+)
G173385 hsdl2,LOC107558657 non-coding downstream 19855 4777546 ~ 4795389 (+)
G173426 NA non-coding downstream 40797 4798488 ~ 4799318 (+)
G173427 NA non-coding downstream 44943 4802634 ~ 4808272 (+)
G173428 NA non-coding downstream 57360 4815051 ~ 4816664 (+)
G173397 NA other upstream 10894 4743569 ~ 4744249 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other upstream 624661 4118034 ~ 4130482 (+)
G173111 LOC108435134,LOC108277016 other upstream 823152 3908942 ~ 3931991 (+)
G173094 NA other upstream 1011938 3740302 ~ 3743205 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 1015407 3465133 ~ 3739736 (+)
ptbp3 ptbp3,LOC106592370 other downstream 42938 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 346036 5103727 ~ 5152836 (+)
G173501 NA other downstream 425800 5183491 ~ 5183777 (+)
LOC103041160 NA other downstream 1778636 6536327 ~ 6541379 (+)
G174259 usp25 other downstream 3146904 7904595 ~ 7925440 (+)

Expression


Co-expression Network