CI01000012_13471010_13484053 (TSPAN15)


Basic Information

Item Value
gene id CI01000012_13471010_13484053
gene name TSPAN15
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13471010 ~ 13486220 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_13471010_13484053.mRNA
TTGATAGGGGGCTTTATTTTGGCCATCGGCATCTATGCAGAGGTGGAGAGACAACGCTACAAAACGCTGGATGGAGTGTTCCTGGCTCCCGCCATTATCCTCATTGTGCTCGGTGTGATCATGTTCATCGTCTCCTTCATCGGGGTTCTGGCGTCTCTCAGAGACAACTTGTGCCTTCTCAAAGTGTTTCTTTACATGCTGGCTCTTTGTCTCGTTTTGGAGCTTGTCGGTGGGATTGTTGCTCTTATCTTTAGGACCCAGACAGTGGACCTTCTCAACAAAAACATTCGTAAAGGCATGGTGAATTACTATGATGACCTTGATTTCAAAAACATCATGGACTTTGTTCAGAGTACGTTCAAGTGTTGTGGGGGAAAGGAGTACTCAGACTGGCAGGTGAACATGTATCATAATTGCTCTGCTCCTGGTCCACTAGCGTGTGGAGTGCCATACGCCTGCTGTATTGTCGAGCCTTCTGAAGTTGTTAATACGATGTGTGGATACAAGACCCTGGGTAAAGAGAGGCTAGAAAATATAGATGTCATCTACATCCGCGGTTGCACTGATGCAGTCTTTATTTGGTTCATGGACAACTATACAATCATGGCTGGACTTCTTCTGGGCATCCTATTACCTCAGTTTTTTGGAGTGCTCTTTACCTGGCTTTATATTACCCGTGTGGAAGATGCCATTGAGGAGTATGGTCACTATATGGATGGTCTGCTGGACGACGGACCCCAGGGGACTAAGCGCCAAAGCAAGCTGGCCAAATGCTGCAGATGCATGCCTTTGATCGACTGAGTGAAAACTCCTAAAAGAAAGCCTTATATTGGATACTACGTAGATAAAAGGATTTATGCAGGTACTATCACCTGCTGTGGATGAAAATAACTGTTGTAGCTCTCTCTTTGCAAAACACAACTGTGCTGTCAATATTGTTTTCACAGTTACACTCAGGGTTCATTATTTTATCTGTCAGCTGAAAATGGATAGTTTATGTGTCAAAATGAACTGATGCTTGGACTGACCTTCAGTGTCAGGTTTTTTCTGCTAAATCACACCTAAATCATATACCAAAGATGCCATATATTCACATCAGGTTGACTGAGTCAGAATGCCTTTAGCTTTTACGGAGTTTAGCTTTGTTTAACAGGGAAACTGATTTGACAATTGGCACCCTGTAAGTCAAAGGTGATAAATTGCAAGGTTTCTTTTTTCCAGTACAACAGTGCGCTTCACATAAGAGAACTTCTATAAATCTACAGCTACATTCGTCATAATAAGAGTGCTGCCTCTTTTGTTTGTACACTATGTCTTAAGATGAGTAACGGTATAAATTCTGACCATAAAATTTCCACACTAAAAAGCTTTGTAAATCCAATCCCTTAGTGGCCACCATACCACCATATGGTGTTTGGTGTTTTTTTATTTTTTTATTATTATTATTATTATTATTATGAAATATTACTTCACATTGAGCCTTTACCTGAAACAGCATTTGTTCCTCTTAAAGGAACACTCCACTTTTTTTGAAAATAGGCTCATTTTCCAACGCGCCTAGAGTTAAACAGTTGAGTTTTACCGTTTTCGAATCCATTCAGCTGATCTCCGGGTCTGGCGGTACCACTTTTAGCATAGCTTAGCATAGTTCATTGAATCTGATTAGACCGTTAGCATCTCGCTCAAAAATGACCAAAGAGTTTCGATATTTTTCCTATTTAAAACTTGACTCTTCTGTAGTTACATCGTGTACTAAGACCGACGGAAAATGAAAAGTTGCGATATGGCGGAGAACTATACTCTCATTCCGGCGTAATAATCAAGGAACTTTGCTGCCGTACCATGGGGTGCAGCAGGCGCAATGATATTGCGTAGCGTCTCTTACAAATGTCTCCATGGTTGCAAGGCACGCCCCCTGTGCAAGCAGGGGGTCACAGGCGCTGCTTAATATCATTGCGCCTGCTGCACCTATGGTACGGCAGCAAATTTCCTTGATTGTTACGCCGGAATGAGAGTATAGTTCCTAGCCATATTGGCCTAGAAAATCGCAACTTTTCATTTTCCGTCAGTCTTGGTACACGATGTAACTACAGAAGAGTCAAGTTTTAAATAGGAAAAATATCGAAACTCTTTGGTCATTTTTGTGCAAGATGCTAATGGTCTAATCAGATTCAATGAACTATGCTAAGCTATGCTAAAAGTGGTTCTGCCAGACCCGGAGATCGGCAGAATGGATTTGAAAAAGGTAAAACTCAACTGTTTAACTCCAGGGGAGTTGGAAAATGAGCCTATTTTCAAAAAAAGTGGAGTGTTCCTTTAATTTTCACAAAGATACTCAATGATCTGATTATTGTGTACTCCTACAAATCTGGGAGTTTTCATGACCATCGTTTATATGTTGTGCTTCTCATAATATTTTTTTCTTTTTCAAGTTCAACATATTTCTGTCAGAGCATCATGTGTACATCTTTGGGTATATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGTGCCAAAGGGTGGTAGTTTTTATATCCTCTATTCTGTCTCTTTTTTTGTATGAACAAAAAATCCAAGTAAACTGTATATTTTAATATAGTTTTTTTTATGATAAATACATAAGATGGTTGTTTCTTGTATTTAAATGACAGGAGAGTCATCAGATGGCATATTTAAAGTTTCTACAGTTTTATGTAAATTTTCACCATATATTGCATTTGTTTCAGTGTCATTATTCAATGAAAAATAATTGCAA
>TU87368
AGGGGAGTTGGAAAATGAGCCTATTTTCAAAAAAAGTGGAGTGTTCCTTTAATTTTCACAAAGATACTCAATGATCTGATTATTGTGTACTCCTACAAATCTGGGAGTTTTCATGACCATCGTTTATATGTTGTGCTTCTCATAATATTTTTTTCTTTTTCAAGTTCAACATATTTCTGTCAGAGCATCATGTGTACATCTTTGGGTATATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGTGCCAAAGGGTGGTAGTTTTTATATCCTCTATTCTGTCTCTTTTTTTGTATGAACAAAAAATCCAAGTAAACTGTATATTTTAATATAGTTTTTTTTATGATAAATACATAAGATGGTTGTTTCTTGTATTTAAATGACAGGAGAGTCATCAGATGGCATATTTAAAGTTTCTACAGTTTTATGTAAATTTTCACCATATATTGCATTTGTTTCAGTGTCATTATTCAATGAAAAATAATTGCAAATAAACAGGTTGATGTGAATAATATTAAGCCTTAACATTACACAAGCCTTAACATCTATTCTTTTATTTTCTTTCTCTTTGTTTGGGCTTTTCTGATATCTTTTGTGTGATTTCTCTGTCTATGCATTGACTTCACTGTTAAAGCTCGAGTATTGCCCTGAACACAGTGAGTGTCCTGCTGAATGAATGAATAAATGATGTTTACAGA

Function

symbol description
tspan15 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN15 (tetraspanin 15).

NR:

description
Tspan15 protein

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component

KEGG:

id description
K17297 TSPAN15; tetraspanin-15

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_13471010_13484053.mRNA False 2760 mRNA 0.39 7 13471010 13486012
TU87368 True 700 lncRNA 0.29 1 13485521 13486220

Neighbor

gene id symbol gene type direction distance location
CI01000012_13445338_13452629 HK2, HKI, HK1, HK1.L coding upstream 18381 13444855 ~ 13452629 (+)
CI01000012_13442338_13442897 NA coding upstream 27791 13440853 ~ 13443219 (+)
CI01000012_13404454_13437477 HKDC1 coding upstream 33288 13404454 ~ 13437722 (+)
CI01000012_13391082_13401374 KIF1BP coding upstream 69318 13391082 ~ 13401692 (+)
CI01000012_13291350_13311094 NA coding upstream 158854 13291350 ~ 13312156 (+)
CI01000012_13498541_13510228 RUFY2 coding downstream 12529 13498541 ~ 13510265 (+)
CI01000012_13522084_13525252 PBLD2, PBLD coding downstream 36072 13522084 ~ 13525319 (+)
CI01000012_13527966_13529695 PBLDP, PBLD coding downstream 41172 13527184 ~ 13529762 (+)
CI01000012_13533459_13538332 PBLD2, PBLD coding downstream 47378 13533390 ~ 13538443 (+)
CI01000012_13551086_13554035 NA coding downstream 64761 13550773 ~ 13554312 (+)
G76569 NA non-coding upstream 81857 13388853 ~ 13389153 (+)
G76567 NA non-coding upstream 83632 13387048 ~ 13387378 (+)
G76566 NA non-coding upstream 84366 13386436 ~ 13386644 (+)
G76565 NA non-coding upstream 98466 13372080 ~ 13372544 (+)
G76600 NA non-coding downstream 34980 13520992 ~ 13521318 (+)
G76594 NA non-coding downstream 52509 13538521 ~ 13539179 (+)
G76629 NA non-coding downstream 69981 13555993 ~ 13556230 (+)
G76630 NA non-coding downstream 71413 13557425 ~ 13557687 (+)
CI01000012_13029637_13033226 RGS17 other upstream 432111 13029435 ~ 13038899 (+)
G76374 NA other upstream 721841 12745531 ~ 12749169 (+)
G76385 NA other upstream 795344 12630755 ~ 12675666 (+)
G75533 NA other upstream 2325271 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 3246723 10223697 ~ 10236276 (+)
G76645 NA other downstream 165847 13651859 ~ 13652234 (+)
G76656 NA other downstream 217475 13703487 ~ 13739731 (+)

Expression


Co-expression Network