LOC103041160


Basic Information

Item Value
gene id LOC103041160
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 6536327 ~ 6541379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU235446
TAAGACAGGCTTAGAGATaagagataaagaataaaacgGGGGCATCTTAAAGCACAGTGGTTAGTGTATCATCTTTAGCAGCTGGAAAGGACTTTGGGTGGCATTTTCTGCTTTATTTCCACGTTGCTTTATTTATCTACACTGGATGCAACTGAGCTTGGGCATCATCACCCAGAACTAGACTGTAGCTGGTAATTCTGATCATTAGTGATTTTGACCTTTCTAGGGAACAGAAGACGGGAGCAGCAGCTGGACGATGATTACGGACATGTTGGGGAGCATCCACACCTCCTGCGATGTTCCAGCTGGGGCAGTTTTTGGACCATGTGACCCCTCTGGTACCTCACTGGGGGACAGCATTGCCATTATAGCCCTGAAGTGCTCAGACAGGCGTGCAACAGCGTACACTCATCAGGTGGACACTTCATTGGCCGGTCACTCTCTGGAAGCCCCAGTCTGGCTCCGGCTGGTGCGGTCGGCCCGGTCTGCAGAAGAACAAAACCTGGAGGCGTTTGTAAAGGACAGTCATCTGTTTTATCGAGCCCTGAAGAACATCTCCAAGATGTCGGAACTTCTGGTTTGGTACGGGACAGAACTAGCTGAGCTGCTGAACCTTACATGCGCTCAGAAAAGTAATAAAGGCTACAGATGCTGTTTCTGCAGACAGAGCTTTCTGTTCGAATTCCCTTTTCTGGCTCATCAGAGATTCTTCTGCTCTGAAAGACCAGCGAGAGTCGGCAACAGCAAGTCAGGATCAGAATCCTCCAAAGTTCAGAACAAAGCATCTACAGATTTCCACAGTCTGGCCAAAAACCTGGagagttttactaaaaggaGACACTCTTTAGATTCGGAGTCTGGCGAAGAAAGTGACGAGGAGAAGCTTTCACTTTCTGGAGAACACCCTCGTGCACCTCCTTCGTTTAAACGAGCGTGCGCTACAGTCGTGAAAAGAAAGCCTGGAGGTTGCGAtagcagaatgatcaatgagggaTGGCGTTCTTCTCCCAGGGCAACCCAAAGCCTTGGCAACCTAGAAGTTCTGGACTCAAAGCCCATTGAAAATTCACCAGGACCCCATTCTGTGCCCCATACTAGAAGGAGGTCTCCATTAGTGACCGCTGGTCCAGCCCACAAGGAGAAAAGTGCATTCGTCCGGCCTCCTCGCTCAATCTCCCAAACAGCCAATCAGGCCACGTCATTCAGATTCAGCCCTGGAATCACTCcaactacatttcccagcatACCCACCCTCCCTAACCCCGCTGCCCAGGCAACTAAACAACCCCAGGACCCGGCGCTCGTCAGCAGGGGTCTCCTCAGACAACAGTCGCTCCTCTGTCAGGAATCAGGGCTCTGGTCCAGGATGTCCTGGTCCCCCCTCCTCCCCCGTCCCCCCGTCCCCGCTGTCCCCGCCCCCCCCGGGCTCTGTCCTCCGGTCCTGACCCTGCAGAACTGGTGCGCAAAGTGCAGCATCTCCTTCCACATGACCTCCGACCTCGTTCAGCACATGAGGTCTCACCACAAGAGGTCCTCAGAGCGCccccatcagcagcagcaggacgCCAAGCCCAGGCTGAGGTGCCCCGTCTGCCAGGAGGGCTTCAGGGAACGCCACCACCTCTCACGCCAC
>XM_022680964.1
agATAAAGAGGATGTATTAAACCCTTCAGGCTGTAATGTTCTCGCGCTTCAGGGCTAAACCCCGCAGGGTGAAAGGTTACAGCCCATAGCCTGCAGTCAGGGTTCCTCTCCTCACGGTTCATTAAGGAACCGCCGGGCGGGTGTTTGTGTGACAGTAATGAATGCAGAACTGCAGCCAATGAGCTACAGCCAATCTCTGCGATGATGGGATGGACGTTTGAGCCAACAATCATATTTACGTCCGGCTAGAGGGAGGCCATTACTGACGGGACAGGTCATAAAAGGGAACAGAAGACGGGAGCAGCAGCTGGACGATGATTACGGACATGTTGGGGAGCATCCACACCTCCTGCGATGTTCCAGCTGGGGCAGTTTTTGGACCATGTGACCCCTCTGGTACCTCACTGGGGGACAGCATTGCCATTATAGCCCTGAAGTGCTCAGACAGGCGTGCAACAGCGTACACTCATCAGGTGGACACTTCATTGGCCGGTCACTCTCTGGAAGCCCCAGTCTGGCTCCGGCTGGTGCGGTCGGCCCGGTCTGCAGAAGAACAAAACCTGGAGGCGTTTGTAAAGGACAGTCATCTGTTTTATCGAGCCCTGAAGAACATCTCCAAGATGTCGGAACTTCTGGTTTGGTACGGGACAGAACTAGCTGAGCTGCTGAACCTTACATGCGCTCAGAAAAGTAATAAAGGCTACAGATGCTGTTTCTGCAGACAGAGCTTTCTGTTCGAATTCCCTTTTCTGGCTCATCAGAGATTCTTCTGCTCTGAAAGACCAGCGAGAGTCGGCAACAGCAAGTCAGGATCAGAATCCTCCAAAGTTCAGAACAAAGCATCTACAGATTTCCACAGTCTGGCCAAAAACCTGGagagttttactaaaaggaGACACTCTTTAGATTCGGAGTCTGGCGAAGAAAGTGACGAGGAGAAGCTTTCACTTTCTGGAGAACACCCTCGTGCACCTCCTTCGTTTAAACGAGCGTGCGCTACAGTCGTGAAAAGAAAGCCTGGAGGTTGCGAtagcagaatgatcaatgagggaTGGCGTTCTTCTCCCAGGGCAACCCAAAGCCTTGGCAACCTAGAAGTTCTGGACTCAAAGCCCATTGAAAATTCACCAGGACCCCATTCTGTGCCCCATACTAGAAGGAGGTCTCCATTAGTGACCGCTGGTCCAGCCCACAAGGAGAAAAGTGCATTCGTCCGGCCTCCTCGCTCAATCTCCCAAACAGCCAATCAGGCCACGTCATTCAGATTCAGCCCTGGAATCACTCcaactacatttcccagcatACCCACCCTCCCTAACCCCGCTGCCCAGGCAACTAAACAACCCCAGGACCCGGCGCTCGTCAGCAGGGGTCTCCTCAGACAACAGTCGCTCCTCTGTCAGGAATCAGGGCTCTGGTCCAGGATGTCCTGGTCCCCCCTCCTCCCCCGTCCCCCCGTCCCCGCTGTCCCCGCCCCCCCCGGGCTCTGTCCTCCGGTCCTGACCCTGCAGAACTGGTGCGCAAAGTGCAGCATCTCCTTCCACATGACCTCCGACCTCGTTCAGCACATGAGGTCTCACCACAAGAGGTCCTCAGAGCGCccccatcagcagcagcaggacgCCAAGCCCAGGCTGAGGTGCCCCGTCTGCCAGGAGGGCTTCAGGGAACGCCACCACCTCTCACGCCACATGACTTCTCATCTGTGACCTGATTGGCAGATCCTGAATAAAGTTGTTATGCTTGTATGAACATATCTGACTTCAGGtctgtcattattattatttttattatatgttattataccacagttaattaaatctgaccctgcaatgtaatGGGCTAAAAGAGGCGTTCTATTAGTGCCGCTaccagccggtaatgcactgtaaccaaggCTCTGTAACCaaatgtattactccgccacatacaggtatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235446 False 1633 TUCP 0.53 3 6537324 6541132
XM_022680964.1 True 1938 mRNA 0.52 4 6536327 6541379

Neighbor

gene id symbol gene type direction distance location
LOC103038257 anxa3 coding upstream 45656 6478050 ~ 6490671 (+)
mrrf mrrf coding upstream 77016 6427802 ~ 6459311 (+)
morn5 NA coding upstream 197181 6319616 ~ 6339146 (+)
LOC111195010 LOC107702182 coding upstream 317609 6212016 ~ 6218718 (+)
LOC103039720 strbp,LOC107686417 coding upstream 596643 5775221 ~ 5939684 (+)
LOC103040857 LOC108433505 coding downstream 52853 6594232 ~ 6621157 (+)
LOC103040555 arl15b,LOC108433533,LOC107713334,LOC107595536,LOC107744085,LOC107686429,LOC108276853 coding downstream 120133 6661512 ~ 6758449 (+)
LOC103021605 vezf1a,LOC108435808,LOC107741171,LOC107653704,LOC107578318,LOC107697453 coding downstream 527481 7068860 ~ 7094059 (+)
LOC103041127 LOC108435809,LOC108277236 coding downstream 560127 7101506 ~ 7140740 (+)
ksr1 LOC107741140,LOC107583358,LOC107653729 coding downstream 605017 7146396 ~ 7201824 (+)
G173875 NA non-coding upstream 24968 6510072 ~ 6511359 (+)
G173874 NA non-coding upstream 27606 6506747 ~ 6508721 (+)
G173868 NA non-coding upstream 44489 6491393 ~ 6491838 (+)
G173858 NA non-coding upstream 134983 6383174 ~ 6401344 (+)
G173841 NA non-coding upstream 193165 6284480 ~ 6343162 (+)
G173890 rasgef1bb,LOC108433534,LOC108276874,LOC107713332,LOC107595538,LOC107685137 non-coding downstream 4896 6546275 ~ 6548777 (+)
G173946 NA non-coding downstream 55769 6597148 ~ 6626288 (+)
G173948 NA non-coding downstream 77455 6618834 ~ 6637114 (+)
G173953 LOC108433532 non-coding downstream 101038 6642417 ~ 6642936 (+)
G174000 NA non-coding downstream 379517 6920896 ~ 6965637 (+)
G173501 NA other upstream 1352550 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 1383491 5103727 ~ 5152836 (+)
ptbp3 ptbp3,LOC106592370 other upstream 1632125 4800629 ~ 4904202 (+)
G173397 NA other upstream 1792078 4743569 ~ 4744249 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other upstream 2405845 4118034 ~ 4130482 (+)
G174259 usp25 other downstream 1363216 7904595 ~ 7925440 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other downstream 1607740 8149119 ~ 8166662 (+)
LOC103038455 NA other downstream 2007505 8548884 ~ 8552610 (+)
rexo2 NA other downstream 2585329 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 4079649 10621028 ~ 10631765 (+)

Expression


Co-expression Network