CI01000012_13516097_13520943 (HNRNPH3)


Basic Information

Item Value
gene id CI01000012_13516097_13520943
gene name HNRNPH3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13515519 ~ 13520943 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_13516097_13520943.mRNA
GCGCGTTCTCGCGAGACTTCGACTATCTGGACTACAGGACTATACGTTCAGGGTTACCTGAGAGGACAGGCGCTTGACGATTGTGACATTGTAGGGAAAGTCAACGGGGTGTGTTTTACCTTCTCCAAAGAGGGAAGGCCGAGTGGAGAGGCGTTTGTAGAGCTGAAGACATCAGAAGACTTTAAAAGGGCTTTGGCAAAAGATCGCAAATACATGGGTCACCGTTATATCGAAGACTATGACAGCAGCAGCGGTTGCATGTTGCGTCTTAGAGGACTGCCGTTCGGCTGCAGTAAAGAAGAAATTGTACAGTTCTTTTCAGGGTTGAAAATCGTGCCAAATGGGATAACATTGCCGATGGACTACCAGGGGAGGAGCACAGGGGAAGCCTTCGTGCAGTTTGCCTCAAAGGAGATAGCAGAAAAGGCTCTGGGGAAACACAAGGAAAGAATAGGGCACAGGTACATAGAGATATTCAAAAGCAGCCGAAATGAATTACGTGCATACTACGAAGTACCCCGGAGGATGATTGGACAAAGGCCTAGTCCATATGACAGACCCCTGATGGGACGCGGGAACTTCTTTGGGCCCGGGCCTGGAAGGGGAGGTGCTGTCCTGGACCAGATACGCAGCGGAGGTGGTTATAGTGGTGGATATGGTGGGTTTGACAACTACAATGGCTTTAACAACTACTGCTTTGGTAATGGCATGTTTGAAGAGCGTGTGGGTGGTGATAGAGGAAGAGGAGGAATGGGGGGTCATGGTTACAGCACCGATTCAAACTCAGGCTTTCACAGCGGCCATTTCGTGCACATGAGAGGCCTACCGTTCCGCGCTACGGAGGCAGATATTGCACATTTCTTTGCCCCTTTGAACCCTGTGAGGGTGCACATTGATGTAGGACCCAATGGAAAGTCTACAGGAGAGGCAGATGTTGAGTTCAGATCTCATGAAGATGCTGTGTCTGCCATGTCAAAAGACAAGAATCATATGCAGCATCGTTACATTGAGCTTTTCCTGAATTCAACTTCAAGTGGGCCATCTGAAATGGGTTAGTATGACTATGTGGAGATTGTTATTATGTAATAGTTTTGTTGAAGTGTATGGATGAGAAGGTGTGAAGACAACATTCAAATGCGAGTCTTTTGTTTTGGGGCCATGAAAACACTGCAGGCCGCGGAGGAGGTTTCTATGGCAACTCTGGTGGCATGGGCTCTCGAGGAAGTGGACTAAGGGGAATGTACTGAGGATGCTTGCAATACATGCACTTTTCAACCCAAAGTTGGAGCTTCCAGCTTGGAAGATCTTTTTGTACGAATATGTTTTCACATGTTCCTATGAAATATGTCCAAAATATTTTACAGGCTTGAAGAGTATGAGCTGTTGCATATATATATTGACCGGCTACTGTACATTTTGCTTATTGAATTTTATATTACATATTCTGTGTTGGTCTAAGATATACTCTTTGTATGTATTTTGACTCAAATGGTTATGAATAGCTTGATTCCCAAGTTTCGAGTGTGAGATTGCACTTTTAAAGCAATAACATCATTTTGGATGTTTACCTGTTTTTTGCTGCTCAGTAAAATTTCTAATTGAAACCTGTGAAATTTACACATCCATGGAATAAA

Function

symbol description
hnrnph3 Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Orthologous to human HNRNPH3 (heterogeneous nuclear ribonucleoprotein H3).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
K12898 HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_13516097_13520943.mRNA True 1634 mRNA 0.45 8 13515519 13520943

Neighbor

gene id symbol gene type direction distance location
CI01000012_13512129_13512368 NA coding downstream 3151 13512080 ~ 13512368 (-)
CI01000012_13459355_13464706 TACR2 coding downstream 49696 13458661 ~ 13465823 (-)
CI01000012_13374979_13384349 NA coding downstream 131170 13374810 ~ 13384349 (-)
CI01000012_13324234_13357963 SORBS1 coding downstream 157556 13323809 ~ 13357963 (-)
CI01000012_13277959_13281157 NA coding downstream 233001 13277777 ~ 13282518 (-)
CI01000012_13538979_13549803 NA coding upstream 17736 13538679 ~ 13549803 (-)
CI01000012_13590555_13590800 NA coding upstream 69579 13590522 ~ 13590800 (-)
CI01000012_13593620_13605408 NFKB2 coding upstream 72658 13593601 ~ 13605988 (-)
CI01000012_13608026_13615552 NA coding upstream 87076 13608019 ~ 13615566 (-)
CI01000012_13634251_13634759 NA coding upstream 113060 13634003 ~ 13634759 (-)
G77315 NA non-coding downstream 29299 13485536 ~ 13486220 (-)
G77393 NA non-coding downstream 30200 13485063 ~ 13485319 (-)
G77289 NA non-coding downstream 62049 13452006 ~ 13453470 (-)
G77282 NA non-coding downstream 107306 13404371 ~ 13408213 (-)
G77316 NA non-coding downstream 262965 13248531 ~ 13252554 (-)
G77407 NA non-coding upstream 30309 13551252 ~ 13551585 (-)
G77409 NA non-coding upstream 32531 13553474 ~ 13553762 (-)
G77423 NA non-coding upstream 59891 13580834 ~ 13585383 (-)
G77424 NA non-coding upstream 64563 13585506 ~ 13587552 (-)
G77447 NA non-coding upstream 203954 13724897 ~ 13726271 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other downstream 559855 12954446 ~ 12957833 (-)
CI01000012_12079581_12084139 NA other downstream 1431259 12078936 ~ 12084260 (-)
CI01000012_12047175_12052116 NA other downstream 1463312 12046728 ~ 12052541 (-)
G75608 NA other downstream 2894648 10611915 ~ 10620871 (-)
G74982 NA other downstream 3939547 9575648 ~ 9576149 (-)
G77287 NA other upstream 98333 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003106 hnrnph3,LOC108438202 coding CM030139.1 CM030139.1 11138197 ~ 11166902 (-)