G174016 (LOC108411648,LOC108276885)


Basic Information

Item Value
gene id G174016
gene name LOC108411648,LOC108276885
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 6988724 ~ 6990776 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU235649
TCTCGTCCTTCACGATGTAGTTGCGGCCGAGTTTTTTGGTGAGGTGAGGAGCCAGCACGTCAAAGCGACGCCGGAACTCGGAGAAGACCATGTGATCGGGAAAACCTTGCCTGTAGATGCGAAGAGCGTCCAGCAGTTTGGAGCCTCGGAGCTGAGCCCTCAGTAAGGCCACGTCGAGCTGCATCAGGCCGGGGTCACAGCTCTCGCTCTGAGCTTCAGGAGAGCCTGATCCTCGCGATGCGTCCGCCCGCGGCAGCAGACAGTGCACGAAGTGAACCCGGGACCTGCG

Function

NR:

description
PREDICTED: unconventional myosin-XVIIIa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235649 True 289 lncRNA 0.61 2 6988724 6990776

Neighbor

gene id symbol gene type direction distance location
LOC103040555 arl15b,LOC108433533,LOC107713334,LOC107595536,LOC107744085,LOC107686429,LOC108276853 coding upstream 230275 6661512 ~ 6758449 (+)
LOC103040857 LOC108433505 coding upstream 367567 6594232 ~ 6621157 (+)
LOC103038257 anxa3 coding upstream 498053 6478050 ~ 6490671 (+)
mrrf mrrf coding upstream 529413 6427802 ~ 6459311 (+)
morn5 NA coding upstream 649578 6319616 ~ 6339146 (+)
LOC103021605 vezf1a,LOC108435808,LOC107741171,LOC107653704,LOC107578318,LOC107697453 coding downstream 78084 7068860 ~ 7094059 (+)
LOC103041127 LOC108435809,LOC108277236 coding downstream 110730 7101506 ~ 7140740 (+)
ksr1 LOC107741140,LOC107583358,LOC107653729 coding downstream 155620 7146396 ~ 7201824 (+)
LOC103047365 NA coding downstream 216305 7207081 ~ 7217675 (+)
LOC103040527 LOC108435812,LOC106567758,LOC106603288 coding downstream 229595 7220371 ~ 7292479 (+)
G174000 NA non-coding upstream 23087 6920896 ~ 6965637 (+)
G173953 LOC108433532 non-coding upstream 345788 6642417 ~ 6642936 (+)
G173948 NA non-coding upstream 351610 6618834 ~ 6637114 (+)
G173946 NA non-coding upstream 362436 6597148 ~ 6626288 (+)
G173890 rasgef1bb,LOC108433534,LOC108276874,LOC107713332,LOC107595538,LOC107685137 non-coding upstream 439947 6546275 ~ 6548777 (+)
G174031 NA non-coding downstream 86995 7077771 ~ 7078247 (+)
G174140 NA non-coding downstream 302106 7292882 ~ 7296362 (+)
LOC103045725 NA non-coding downstream 367809 7358585 ~ 7381032 (+)
G174170 NA non-coding downstream 654153 7644929 ~ 7645551 (+)
G174176 LOC108435816 non-coding downstream 676625 7667401 ~ 7671860 (+)
LOC103041160 NA other upstream 447345 6536327 ~ 6541379 (+)
G173501 NA other upstream 1804947 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 1835888 5103727 ~ 5152836 (+)
ptbp3 ptbp3,LOC106592370 other upstream 2084522 4800629 ~ 4904202 (+)
G173397 NA other upstream 2244475 4743569 ~ 4744249 (+)
G174259 usp25 other downstream 913819 7904595 ~ 7925440 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other downstream 1158343 8149119 ~ 8166662 (+)
LOC103038455 NA other downstream 1558108 8548884 ~ 8552610 (+)
rexo2 NA other downstream 2135932 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 3630252 10621028 ~ 10631765 (+)

Expression


Co-expression Network