LOC103045725


Basic Information

Item Value
gene id LOC103045725
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 7358585 ~ 7381032 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU235803
AGGAAcatcttttcctttttaaagatttgtatttcatgtttGTCTCATACATATGAACATTACAATAGTcatcttcagttttttttctcatttgtttttaaattattacttgATCGTATCTCCATATCATGTAAAAAGCATCCAGCATTTTGCTTCACCTGGTTATTCGGAGCATTGGAGtacatcaaataaaacaaaatcaatcaaaaaaaTGTAGTATACATTTGCAGCAGGAAACAAGagacaaatatacaaatatacatcaATCAAATCACCTTCAACAGTCTGCACTTTAAAATCGGTTCGTTCAATGTCATTTTCTCTGACCTGAAACCAGTCCTTATACATACAAGAAAATCAGCACAGCAGCTATGGTTCTCTGTGTGAacatatttttcagtgttttctgttggtTGTATctaaaatacatcaatattttagATTAGAGGTTGGCTATATCCGTGAAATGAAATCTGAGCTTGAGTTTGAATTGCTTTTTCGTTTTGCTTGCTCTACGCCTGGCCTTCTACTCATCTGTAGAAGCAACATTCACATGAGGAGTCTTCATACATGAAACCCTAATCGAGGATCATTCAAAATAGCCAACATGTGCAAAAAAATGGAAGTGGTCAGGTCGTTCCTACTGGTCACAGTGCAATGAATTATCCGTATACTCAGTCAGCATGGTTTGCTTGTTAACGCTCTGATAAAacgataaaataaattacatttctttttcaCCGTCAAACTCACAGGACTGAGGTATGGTATAAAAATGTGTGCCTTCTTAATTTACTCAGCAGAGAACTGATCGAAACAACAAGCTTTTATGCAACAGCTGTGACGTACACTCCAGATACCGAGTTCCAAAGTCAAATGGAACAGAGTGGATAAGACAAACAACATCAAATAACATaTGGGATGCTGTAGTGCTTGAAGTCTCATGACATCACCTGTACACAACCAGTTAGAAACTTCGGCCCATCTTCCCAGGACCTCCAGATATTCTCTGGTGGGGCAAAAGAGGTAAGGGTCAACATTCATACTTCAATAGTCAGACTTTCAGAATTCAGAATTCACCAGTACCTGAGCTACTTCCTCTCTCCCTTGCCGTGGACATGTGACCAAAGAAGTGCTAGCACATGATCGTAATTCCAAAGCTAATCTAAAATTCTGCAGATTCTTTCTGGAATTTATTTGGTACACCTTTCATATACATAGTTGGGACTACAGTGATGAACTGTAGCTCATCATTTGCTGCACTTCAGTGTATCGACCACCTCTACCCTGTTTATTAATGGAGAGGGGTCACTATCTCCACTGCCAACATATTATTTGAGTAGTCCATCGCCCAATATGCAGTCATGAGTTTTACTGTGACCAGATTGTGCTTCAACAGATGTGCTACAGTTTCTAACTGTAAATCtctgtaaaacattattaaaaaattaaaggtgTTGTGTCTTTCGACTTGAAATCTAATACCAAGTAAAGCTGAATTAATGCCCAATACCAATACAGTGTGTCAGGCaaacattttacatatataaaaaaaaccctacaaGTTAATTCCAAGTGTTTCA
>XR_001518606.2
GTGTAATCAATCCTAGCCAATGAGGATTCAGCAGGTTGTCATAGAGACGGAGTAGTAGAAGGTtcgagagaaaaaaagaggagggGGTAAAGGGTGAGCACGAGGCAGCAGCAGGTTGTGAGTTCGCTGCCTAGCCAGCTAAAAGTTTCTCAACTAGAGAAATATGTTAGTTTTGAGTTTATTAAGTGGGTAAAAACCTCGGACAGAGTGTTTGTCTACCTTTTTTTGAGTTGTGCTGGACTTTATATGCACCCTGTGTCAGTGTTTCTGCTCGAAACCTGGAACTCACGAGGCTGCTAGCTGGCTAAGTTAGCTGCGTGAAGCTAAcgggtgtgtgtgctaaacccTGCACCAGAGCAACGTTCCCCGTTAAACTGTAAAGCAAGGTCAGTTATAACTGTGAGATATTGTCAACTTACACAGTTGGGCTGAAGGAGAACTCTCTTTTAACTACATGCTGCGgctgaactgagagagagatgctgGCTAGTGAGCTGCGGAGCTTCGCTACTGCTGAACCGAGAGAGCTGTTTTGCTGAGAAGCGAAGTGGCACTGATTAAAGCAGCTTTTACTGGATCCACAATACAACTGAGACGTGGCATATGTTGAGCAGATCACTTCTGTAAACAGACATGGAACTACACAGCAGAGAACTGATCGAAACAACAAGCTTTTATGCAACAGCTGTGACGTACACTCCAGATACCGAGTTCCAAAGTCAAATGGAACAGAGTGGATAAGACAAACAACATCAAATAACATaTGGGATGCTGTAGTGCTTGAAGTCTCATGACATCACCTGTACACAACCAGTTAGAAACTTCGGCCCATCTTCCCAGGACCTCCAGATATTCTCTGGTGGGGCAAAAGAGGATGACAAAGTGGCAGTGCACCATGGGGAAAGAGGGCACAGAGTCGTTCTGTTCGCCGAGTTCAAGCAAGGTTTTTAAATATCTCCTACTGAGTGACCCCTTCTAACTAAACCTGCTGTAGGTAGGTCTCAGGGAAACTGTCCTGCTTTTCTAATGACTCATCTTTGATAGGACTGCAGCATCTTCGGAGACTGCGCTGCCCACTGCAGCCCCTGCTGCTGACTCACCATGTCtgcacctgcacacacacaaactctacaCGCTCCGTCCCATAGTCTGCCCCCGAGTCACCTCACCTCATCAACTGCCTTACCAAAAGTATCGGATGGACCTCctttattccagagaacacagttccaatgCTCCTCAGCTCAGTGCTCACATTCATTTGCTCAAGAGAATCtgattctattggcagtacttcatTAAAATGACCAAATGagctatatgtatgtatttacgCATCTGTGTTAGCAATAGGTTCAACTTAATGTAGCTGAATGCATGTGGAtccaaatttaaaaatgtttgtgtggTAAGACATTTATAAGATATTTATATCACCTTTAATGTCTTTGTGTTGCTGTACAACTTATAACAGGTGTTATTTGAACCTTATAGTACACATTTGGATTGTATGGGCTGTCTGCAAGtatatactaaaatattaacaaaacacACTTTATCTACTATTACTTGGactctttaaaaatgtgtttcattGATGCCTATAGCCATTTACTGTAGCCATTTGTCAATaactttttcaaaaaaaaattatttgttcatttatacCTGAATGTTTACATTTGCTGCATTTTCTCAAAAGATCTTTCTTTTATGATCTTTAATGATTCTTCTGACTGAACCCAGACTGCTAAATCTAAAGATTTGCTTATCAAAGTGCAGAGAACAAATGACAGCAGGCTGAGGTTAATCCGGGCCACATTCAGCAGACTGGATATATCTCCTGCAAAAGGACAGAAGTCATAAGGAGTGTCCAAGAGACTGTGGTGGAAAACCCCACAGGGAATTATTCTCCTTGGATGCCCTGTGCCCTTCCCTCCCCACTTCACATCTCTGTCTATAGCCCTGTCATTCTGGAAACATCCCGACTTTCACGGTAAATATCCAGCCTTTCAGCTGAGCTTTAATTGCGCTGAgaccaaacattaaaaaagaaagaaaaacggGAGCGAGAGCGTGCAAGACTTTTTTCTGCTTAATCCACTTTCAACGTGCATGCAAATAGCCCGTCGCCCTTGAGTTTCAAAGTGGGTTCCGTGCTCCTCGCTAATTAGACAAGCTTCCCCGGCTTCCTCTTCTCTTTCTAATTAGAATCTTTAATAACAAACAAGCGCCGACCTTTACAAAAGGCTTCTCCACAATCTCCTCCATTAGTTAAACGGATGAGGAGGGAAGGGGTTAGAGAACGATCACCCCCCCACAGCTCCCCTCCCATACCCCAACAGCACTGAAGCATCATCCAAGAGCCTTGGGCCATGCCAGTGGTCCACAATAGTGGCTTCCTGTTGCAATCTGCACGAGGCGTTGGATTGAGGGCGATAGCGGGAGGAAAGCGACAGGACACAAAGACGACATCGGAGGCGCACAACAAATACACATGGTGGCTTTGTTTGCTCTGACATGGACAATTAGCCCTCAGCTGCCGGCATCGCGCAGCCAGGAAGGTCTTATCTAATAAAGGCAGGCAAAATGACTTTTATTGTTCAGGTAGATTGCCTCTAATGATAGTGCCATCAGTGTAAAAGGATATGAATAAAAATGGGGATGTGATGGGGGGTGCAGAAggggaagaaaaagaaagagagaaagtggcTCTTCAGTGGATGGTGGGAGCACGAAAAGACACCATCTGGGAGCGCTGCAATCTCTTGATTATCTTCCTGTGCTAATTTTCTTTTCAGTGCATACAAATGATTTACTTTGAGCAAAGGTGAGAAACATGAGTGCGATTGAGCCAAAGACGCTGTTTTTTCCCCTCCCCCCTTCTTTTTCACATCAAAGTTAGAGAAATAATGGCTTCTCTCTGATCTTGTGCAGAAAAGCACATGTTCCTCTGTGTGTAACGTTTGCACAGTGGGACCGAGCATGTCGCCAGCTTCCTCTGGGAGCAGCGGTGGCGGGAAAGAAAAGAAGGCGTTTATTTGCATGGCACGAAGACAAATTTGCAGCATGCTAATGAACAAATATCGAATGGCGATGTTAGAGCTGTGCGGACATCTGGTGCCACGCTGCATCAGCGATACAACAACCTGCAATATCACAGGAGCCCCGTGTTTGGAATAATGGTGCTGCCAGCTTGTGTTGGGCATTAAAGCTTACGATCtgaatgtgcatgtgtgcagGGGAGTGTGTGACTCTAAAACAAATGAGGtcataaaagaaaatgaacGCAA
>XR_001518607.2
GTAATCAATCCTAGCCAATGAGGATTCAGCAGGTTGTCATAGAGACGGAGTAGTAGAAGGTtcgagagaaaaaaagaggagggGGTAAAGGGTGAGCACGAGGCAGCAGCAGGTTGTGAGTTCGCTGCCTAGCCAGCTAAAAGTTTCTCAACTAGAGAAATATGTTAGTTTTGAGTTTATTAAGTGGGTAAAAACCTCGGACAGAGTGTTTGTCTACCTTTTTTTGAGTTGTGCTGGACTTTATATGCACCCTGTGTCAGTGTTTCTGCTCGAAACCTGGAACTCACGAGGCTGCTAGCTGGCTAAGTTAGCTGCGTGAAGCTAAcgggtgtgtgtgctaaacccTGCACCAGAGCAACGTTCCCCGTTAAACTGTAAAGCAAGGTCAGTTATAACTGTGAGATATTGTCAACTTACACAGTTGGGCTGAAGGAGAACTCTCTTTTAACTACATGCTGCGgctgaactgagagagagatgctgGCTAGTGAGCTGCGGAGCTTCGCTACTGCTGAACCGAGAGAGCTGTTTTGCTGAGAAGCGAAGTGGCACTGATTAAAGCAGCTTTTACTGGATCCACAATACAACTGAGACGTGGCATATGTTGAGCAGATCACTTCTGTAAACAGACATGGAACTACACAGCAGAGAACTGATCGAAACAACAAGCTTTTATGCAACAGCTGTGACGTACACTCCAGATACCGAGTTCCAAAGTCAAATGGAACAGAGTGGATAAGACAAACAACATCAAATAACATaTGGGATGCTGTAGTGCTTGAAGTCTCATGACATCACCTGTACACAACCAGTTAGAAACTTCGGCCCATCTTCCCAGGACCTCCAGATATTCTCTGGTGGGGCAAAAGAGGATGACAAAGTGGCAGTGCACCATGGGGAAAGAGGGCACAGAGTCGTTCTGTTCGCCGAGTTCAAGCAAGGACTGCAGCATCTTCGGAGACTGCGCTGCCCACTGCAGCCCCTGCTGCTGACTCACCATGTCtgcacctgcacacacacaaactctacaCGCTCCGTCCCATAGTCTGCCCCCGAGTCACCTCACCTCATCAACTGCCTTACCAAAAGTATCGGATGGACCTCctttattccagagaacacagttccaatgCTCCTCAGCTCAGTGCTCACATTCATTTGCTCAAGAGAATCtgattctattggcagtacttcatTAAAATGACCAAATGagctatatgtatgtatttacgCATCTGTGTTAGCAATAGGTTCAACTTAATGTAGCTGAATGCATGTGGAtccaaatttaaaaatgtttgtgtggTAAGACATTTATAAGATATTTATATCACCTTTAATGTCTTTGTGTTGCTGTACAACTTATAACAGGTGTTATTTGAACCTTATAGTACACATTTGGATTGTATGGGCTGTCTGCAAGtatatactaaaatattaacaaaacacACTTTATCTACTATTACTTGGactctttaaaaatgtgtttcattGATGCCTATAGCCATTTACTGTAGCCATTTGTCAATaactttttcaaaaaaaaattatttgttcatttatacCTGAATGTTTACATTTGCTGCATTTTCTCAAAAGATCTTTCTTTTATGATCTTTAATGATTCTTCTGACTGAACCCAGACTGCTAAATCTAAAGATTTGCTTATCAAAGTGCAGAGAACAAATGACAGCAGGCTGAGGTTAATCCGGGCCACATTCAGCAGACTGGATATATCTCCTGCAAAAGGACAGAAGTCATAAGGAGTGTCCAAGAGACTGTGGTGGAAAACCCCACAGGGAATTATTCTCCTTGGATGCCCTGTGCCCTTCCCTCCCCACTTCACATCTCTGTCTATAGCCCTGTCATTCTGGAAACATCCCGACTTTCACGGTAAATATCCAGCCTTTCAGCTGAGCTTTAATTGCGCTGAgaccaaacattaaaaaagaaagaaaaacggGAGCGAGAGCGTGCAAGACTTTTTTCTGCTTAATCCACTTTCAACGTGCATGCAAATAGCCCGTCGCCCTTGAGTTTCAAAGTGGGTTCCGTGCTCCTCGCTAATTAGACAAGCTTCCCCGGCTTCCTCTTCTCTTTCTAATTAGAATCTTTAATAACAAACAAGCGCCGACCTTTACAAAAGGCTTCTCCACAATCTCCTCCATTAGTTAAACGGATGAGGAGGGAAGGGGTTAGAGAACGATCACCCCCCCACAGCTCCCCTCCCATACCCCAACAGCACTGAAGCATCATCCAAGAGCCTTGGGCCATGCCAGTGGTCCACAATAGTGGCTTCCTGTTGCAATCTGCACGAGGCGTTGGATTGAGGGCGATAGCGGGAGGAAAGCGACAGGACACAAAGACGACATCGGAGGCGCACAACAAATACACATGGTGGCTTTGTTTGCTCTGACATGGACAATTAGCCCTCAGCTGCCGGCATCGCGCAGCCAGGAAGGTCTTATCTAATAAAGGCAGGCAAAATGACTTTTATTGTTCAGGTAGATTGCCTCTAATGATAGTGCCATCAGTGTAAAAGGATATGAATAAAAATGGGGATGTGATGGGGGGTGCAGAAggggaagaaaaagaaagagagaaagtggcTCTTCAGTGGATGGTGGGAGCACGAAAAGACACCATCTGGGAGCGCTGCAATCTCTTGATTATCTTCCTGTGCTAATTTTCTTTTCAGTGCATACAAATGATTTACTTTGAGCAAAGGTGAGAAACATGAGTGCGATTGAGCCAAAGACGCTGTTTTTTCCCCTCCCCCCTTCTTTTTCACATCAAAGTTAGAGAAATAATGGCTTCTCTCTGATCTTGTGCAGAAAAGCACATGTTCCTCTGTGTGTAACGTTTGCACAGTGGGACCGAGCATGTCGCCAGCTTCCTCTGGGAGCAGCGGTGGCGGGAAAGAAAAGAAGGCGTTTATTTGCATGGCACGAAGACAAATTTGCAGCATGCTAATGAACAAATATCGAATGGCGATGTTAGAGCTGTGCGGACATCTGGTGCCACGCTGCATCAGCGATACAACAACCTGCAATATCACAGGAGCCCCGTGTTTGGAATAATGGTGCTGCCAGCTTGTGTTGGGCATTAAAGCTTACGATCtgaatgtgcatgtgtgcagGGGAGTGTGTGACTCTAAAACAAATGAGGtcataaaagaaaatgaacGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235803 False 1583 lncRNA 0.37 2 7363239 7366054
XR_001518606.2 True 3293 lncRNA 0.45 6 7358585 7381032
XR_001518607.2 False 3190 lncRNA 0.45 6 7358587 7381032

Neighbor

gene id symbol gene type direction distance location
LOC103046439 NA coding upstream 45741 7298963 ~ 7312844 (+)
LOC103040527 LOC108435812,LOC106567758,LOC106603288 coding upstream 66106 7220371 ~ 7292479 (+)
LOC103047365 NA coding upstream 140910 7207081 ~ 7217675 (+)
ksr1 LOC107741140,LOC107583358,LOC107653729 coding upstream 156761 7146396 ~ 7201824 (+)
LOC103041127 LOC108435809,LOC108277236 coding upstream 217845 7101506 ~ 7140740 (+)
LOC103040212 LOC108435805 coding downstream 302135 7683167 ~ 7685459 (+)
LOC103044917 LOC108435817 coding downstream 358579 7739611 ~ 7759850 (+)
LOC103039588 LOC108435821 coding downstream 649243 8030275 ~ 8062760 (+)
LOC103042774 LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107653702,LOC107583375,LOC107741170 coding downstream 754547 8135579 ~ 8143458 (+)
LOC103042468 NA coding downstream 764217 8145249 ~ 8148344 (+)
G174140 NA non-coding upstream 62223 7292882 ~ 7296362 (+)
G174031 NA non-coding upstream 280338 7077771 ~ 7078247 (+)
G174016 LOC108411648,LOC108276885 non-coding upstream 367809 6988724 ~ 6990776 (+)
G174000 NA non-coding upstream 392948 6920896 ~ 6965637 (+)
G173953 LOC108433532 non-coding upstream 715649 6642417 ~ 6642936 (+)
G174170 NA non-coding downstream 263897 7644929 ~ 7645551 (+)
G174176 LOC108435816 non-coding downstream 286369 7667401 ~ 7671860 (+)
G174256 usp25,LOC107680319 non-coding downstream 502684 7883716 ~ 7892563 (+)
G174255 usp25 non-coding downstream 521768 7902800 ~ 7903842 (+)
G174263 NA non-coding downstream 625241 8006273 ~ 8064801 (+)
LOC103041160 NA other upstream 817206 6536327 ~ 6541379 (+)
G173501 NA other upstream 2174808 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 2205749 5103727 ~ 5152836 (+)
ptbp3 ptbp3,LOC106592370 other upstream 2454383 4800629 ~ 4904202 (+)
G173397 NA other upstream 2614336 4743569 ~ 4744249 (+)
G174259 usp25 other downstream 523563 7904595 ~ 7925440 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other downstream 768087 8149119 ~ 8166662 (+)
LOC103038455 NA other downstream 1167852 8548884 ~ 8552610 (+)
rexo2 NA other downstream 1745676 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 3239996 10621028 ~ 10631765 (+)

Expression


Co-expression Network