acer3 (acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427)


Basic Information

Item Value
gene id acer3
gene name acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8149119 ~ 8166662 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236008
TAACACCATGTATCGATACAATCCGATTCAGAAAAATGACATATTGCTGAATTGATGTACTGTACCCACGCCAGTtatttaagaaagaaagaaacctgACTGGTTTTGGTTTACAAATTTACACAGACATATCATAAATGGACATCAGAGAATAAATTAAACTTCaagataaatgaatataaaagaaTATCAGCCCTTTAGATACACCTGTACTTTCTCAATGATCTTTTTCCTGTAATCACTTTCTGCCATATCTTTTACCTTCATAATATGTCTTTGTTTGTATAAACCCTGCCCAGATGTAGAGATACTGCGTCTCAGTGGACATTTTTCTGTTATCTGTTATTCATGTAGGTGTACTTGCAGTGGAAGGAGCCAGTGTTTCATCAGgtcaTGTACGGCATGCTGGTGGCGTGTTTAGTGTTCCGGTGTGTTTTCATCGTCACATGGGTTTATCCGTGGCTGAGAGCACTTTGCTACACGTCTTTAACCGTCTTCCTGTTGGGATTCGTTTTATGGAACATTGATAACATATTCTGTGACTCTTTAAGGGCCACACGGCAGAGCCTTCCACCTGTAGTTGGAGCAGTGACTCAGCTCCATGCTTGGTGGCACATTCTGACTGGTCTTGGCTCTTACCTCCACATCCTTCTCAGTCTTCAGATTCGTTCAACCTACCTCAAGTACAGGCCGAAAGTGAAGTTTGTATGTGGCATTTGGCCAATGCTGCACATCGAGTCCCAGAAGACAAGCTGAAAGCGCACCAAGGGGATGAAGATGGCAGCCAACCACAGACCTCGGACGCTACGAGGTCCAGCCAGTCGCCTCCAGCAGAACCTGGACGTGACCAGCAGCTGGACGTTTGGTCCTCCCATCCCCACATTCCCCCGCTTCAGTTTGCCAAGTATAGTTTGGAGAGAGTTTGCCtgctgtggagagagagagagagagagagagatggtctgtgtttctttgttttattccCGGATAGATCAGAGCTTCGTGCTATGCGTGTAGAGAGATGACACACGGTATGTTTGCACACGGTAGGCTTACAATAGCAGCATTCACTAAGGACTGACCAAATTTGATTATTGTTTAGATTATGGTCAAATTGATTTTGACCAGATTGGATGAAAACAGGAGATTTAGGTCCTCAATGTAggaatgatgtaaaaaaaaaaaggtaacatTTGATTATATATCAGATATTAATCATATCTAATCATTATCAGCCttattgtaatttgtttttgttttaatgtcatTTACCGATTTCAGCTAGACTACTTCCTTATCTTCTGTGATTGGGAATGTACAGCATGTCAAACATCACAAATTGtcattactgtaattatttaattgaatgattaattgaaattagtttttttgtgcTGTAGAGATCTTACGTTCAGTCTTTTTTTAACAATCAAAAGGGGATTTAATACGAATCAAAGGGATAAAGtcaggtttttattattttttttttatgagacgTTGATGAGACAAATagtattaaccttttttttttttttttttcctagctGTTTAATCCTCATCAAATGAGGAGTTGAGTGACTGCAGTAATTATGtaaaatgttacattacatAATAGTACTGTAAATGTGGTATTTTATcgtttgtttaatatttcaaaaGAAATATCATTTTTCTAAATTCCTCTAGAATTAAATATTTAGGTTGTAAACCGAGACATTCACGTGGAGTTTGGTTTGAAACATTTGGTTTTCAATGGTGCCTCTAAAAGCTCTCTAATAGActgtaattatattaataataaatgactAAATAGTTTCAAGTATATGTCTTTGTTGTAAGGGCCAAAATTGTGGCTAAGCTGTCTGCTAGGCCACCCGAGCCACCAGAGGGAGACACAGAACCACCACACACTGATTAGGCTTTCACCACCACTGTATATGTACACAACAAATccatcatatatattttatctatttagCCGTTTCTCACCAAACCCTCCTCTCTGAATGACTGTGTTTACATCAGATCCATCACTGAATTATGCAatcgttttaaaaaatgtgtggaattcccttttaattgtgtttgaaccaatgactgtagaaaacatggacaCTGTGGTTATATTTCCTTCTCTTCTGTAAAAAATGGTGCCAAAATattccaccatgttttacataaaatagacttttgatgtagtaaaacatgataaaaagtacttacctttgataatGATCACAACTCctttctcccacagcgttctgagatccaaaAATTTTAACAGGtcgtccaaacacccttcagactgggtgacacagggcacaatttgccctgataaattgATTTTCCACCACTATccaggcttaaagtagctccacacctccttgctagaatccgaagagccctgatatttaaaacgaggcattaataactttaaaaagtgcacaagaagcttattaaacaacactgtttacatcccataactctagcttcagctcagagcgccgccatcactgtaccgataatgacatagacattgataaatatacatagactctgcatagcatagcagccagtgccaggaggcaggctatgcggaatctatgtatatatatataatatatatatatatatatgtctgtcattatcagtacaatgaTGGCAGCACACAAAGACTGGTGTTTCTGCATCTAATCAATCTAATattgattcttttatttacattttaatatccgCTATTACAGTTTTAAGTcttaagaagtaaaaaaaaaagcaaaatattgttgtgatcaattggatggattttttttttttaaatgattaacacCACTAATTTTATGGTCGTTTTTCTGGACAGAGAGTTTTTCCTGGCAAGTCCTGAATGAAATGTTCCTTTCAATGGAAATTCTCAGCCTAGGCTTAGGCTCAGTTTGGGGAACTACCCTATAATGTTTTGAAACTCATTTCCATgggaaaataaaatgtgaaagtaTTCGCCTAATAAGACCTGTtgtgaggggcggagctacacatcatactgcaactAGCCAGCAGAGGTGTTAGACCTGTGGTAGCTTCAGTTTTGGAAACCCTGTGCTGTCCATGCTTATGTACAGTCATTGGTtttatttcatgtgtttttattattatttaatgtccAGCATTGATTTgcctttttataatttattctgTGAACAAAAGTGGCTCCTTATATGAAGATATACGGAAGTTCTCATATCGTAAGGCAGTATTTTATGAAGGAATAGCATTGAAAAGTATGGAAACCACTGAAGTAGTGAGTCAAGCTCCACATCATCATTACTTCACCTTTCACAGTTCAGCAACACTACTGTCGGCTACTGGTGATACCAGTCCTGGTCTCACACTAGTCTAGGATTCAATTGGTTCACCAGGCCTGTCTGTGTCTTCCGTATCGGCTGCAAGATCCAGAACCATTCATTATCAGACCAACAAACATTTCAACCTGTGAACAAACATGCTGTATGTTTTACTTGTCATGCATCTATAccctacatacagtattttacattatatatttggTTATGCTTATGAAagaatacaacaaaaacatagTGCATCATAGTATTGTTCTTtttggttctgttttttttttttttgtggactcATCCCCTACTGACTGAAGCAGCATACTCTCATACTTGCATACTGTGTGTGGCcggtttattagaaacacctaaattGTCTAAAATGTGTCAGTACAAGCACATTGTTAATTTTATCAGaacatttatataaacattcatatattttttacactataaggcgtacttaaaatcctttaattttgccaaaaatCGTCAATTAGAGGTGattattatcagactgtagcctgctgctaaccccagctagcgctgatggagcagcattagcgttagcccctaaccatgctaagcgttAGATCTTTCCCCATGCAGAGGGGAgtatatatcggactgtagtctgcgtgtttaccgcgTTAAAACAAGGTCTAGCTAACGAACCTCTAGTTAATATCGGTCTGCCTTACAGTAACATTTAGATTGCTCAGTGTGGTGTTGTCGGACGGCatagtgctagcagttagccactaatgctaatgctaatgctggagCCTTTGTGGaaatccagcgctcgtttgactttaaatgactttaagtcttttttttttttatcacagttttgtgTAACCACAGTCTTGACAtattctccttcaccagtcttacacactgcttttggcaaACTTTATgcctgccactcctggtgcaaaaattcaagcagttcagcttggtttattggcttgtgatcatccatcttccacttgattatattccaggggaTTTcattttgctaaaatcaaagaaactcatcatttagttgagtagttacgAGCTGTATGAGAGTGACACTCGTCAGGGTTCAGCACCAGCATATCCAACCAATAACTAATGctaaatgataataaattcTAACTAATACTAATGAAGGGGATTGTTAACGCAATCTGGGCATCAGCAGATGGGCTGTAGGTCAAGCTCAGGGCTTCCTTGGAGAAGACCTTTAGTAGTCTCATACTGTGTTCAGTAGTCCGACTCTCTGAGGGAAGAAACTGTTATGCACTCTAACCATAAACTTAAAACACTGTCAGATTGTCCAGAAAACACATGtttgtatgtgtttctaataatccGGCACTACAGTGTATCAatgaaaaatcaataaaacaaatgatgcttatgattttttttttctcatcgaTTTTGGAATAAGAGCACAAAGCCTTAGCAACACTGCACAACCAACACTTAACGCTAATACTGGACCCTTCTTGTAATAACCCTCCCTACCTTGAAATTGCGCTTGTTTGTGGCCTACTTGAACTGCCAGTGACTGTGTTAAACTTAATGAAAGCTGTGCCATGTTTtggacctggactaccacCTCTAGTTGTGGCTTTGCAAGTTATTGTATCAGTACATCAGAAAATCACTATATAAAGCACAGTTCTACAGGAACGTATCGTAGAACCTGTTCTGATTAACTTGCTGCTTCGGATAGACTGAGGTTTAGAAGACCTGATATTAGTATTGAGGGTGccttagtgttttttattatttttatttttattttttttttcctggtggTAAAATATATTCCATGTTGCCTTGATGTCCCTCATATCTCTCCTATCATATCAGCTTTCATGTGCATCTTCCTCTtactcatcctcatcctcatagCATACAAGCCAAGTAATAAGCTGTTACCCTTATGTGCCAATATACTGTATTCCGCAAAAAGAgatcaaacagaaaaaaaaggaaacttgCTGAAACTACTGCCAAACCCATGTAATCTGCTGTCAGCGTTTATGAAGAAATAGCAGGAATCAATTCATTAGTCTTCATCTGTCAGACAGAGGCTGTTCCTGCTCTGACTtattatgtgtatgtgtgtgttttgttgttgtttatttgtttaaaaaaaaaaagtatgatgtAGGTTCAG
>XM_007244740.3
aagattaggaaatgtttataaaaattataagcaggagtggtgtgtttaatcacttcaaaggaacacattttaagGGGCGTGGTTAATTCCATGGAATACCTTTCATAAGTGCATTCTATGGCACCTTTAAAAAGCTAGTGCACTACGTAGGGAACATAGGGGGTAGGGCAccatttgggacacagcctaCTCTAACTGCTCCTAATGAAACAAAGCCTCACCCTGCTGCAGCTGCTTTATAACTAGCCTACGGCTACTGTTAACCTCACCTGTACTTTAGCCTGCTgtgctctgattggctcaaaCCCCGAGTCCGTTACTAGGGGAAACCGAAGCCACGCCTTTCACGCGGACCGTGATCCTCCCTCTCATTCTCATCATGGCTCCGGTGGCGGACAGACAGGGCTACTGGGGGAGCCCGACCTCCACGCTGGACTGGTGCGAGGAGAACTATGTCGTGTCGTTTTACATCGCGGAGTTCTGGAACACCGTCAGTAACCTGATCATGATCATCCCTCCAATTCTTGGAGCCCTGCAGACGTCTAAAAATGGGCTTGAGATCCGCTATGTGTGGGCTTATTTAGGACTTGCAGCTGTTGGAGTTGGATCATGGAGCTTCCACATGACACTGCAGTATGAAATGCAGTTGTTAGATGAGCTGCCGATGATCTACAGCTGCTGTGTCTTCGTTTACTGTATATATGAATGCTTCAAGCAAAAAAATGGCATCAACTATTTCCTCATCGCACTTCTGcttttattcagtattattgTTACAGTGGTGTACTTGCAGTGGAAGGAGCCAGTGTTTCATCAGgtcaTGTACGGCATGCTGGTGGCGTGTTTAGTGTTCCGGTGTGTTTTCATCGTCACATGGGTTTATCCGTGGCTGAGAGCACTTTGCTACACGTCTTTAACCGTCTTCCTGTTGGGATTCGTTTTATGGAACATTGATAACATATTCTGTGACTCTTTAAGGGCCACACGGCAGAGCCTTCCACCTGTAGTTGGAGCAGTGACTCAGCTCCATGCTTGGTGGCACATTCTGACTGGTCTTGGCTCTTACCTCCACATCCTTCTCAGTCTTCAGATTCGTTCAACCTACCTCAAGTACAGGCCGAAAGTGAAGTTTGTATGTGGCATTTGGCCAATGCTGCACATCGAGTCCCAGAAGACAAGCTGAAAGCGCACCAAGGGGATGAAGATGGCAGCCAACCACAGACCTCGGACGCTACGAGGTCCAGCCAGTCGCCTCCAGCAGAACCTGGACGTGACCAGCAGCTGGACGTTTGGTCCTCCCATCCCCACATTCCCCCGCTTCAGTTTGCCAAGTATAGTTTGGAGAGAGTTTGCCtgctgtggagagagagagagagagagagagagagagagagagagagagagatggtctgtgtttctttgttttattccCGGATAGATCAGAGCTTCGTGCTATGCGTGTAGAGAGATGACACACGGTATGTTTGCACACGGTAGGCTTACAATAGCAGCATTCACTAAGGACTGACCAAATTTGATTATTGTTTAGATTATGGTCAAATTGATTTTGACCAGATTGGATGAAAACAGGAGATTTAGGTCCTCAATGTAggaatgatgtaaaaaaaaaaa

Function

symbol description
acer3 Predicted to enable phytoceramidase activity. Predicted to be involved in phytosphingosine biosynthetic process. Predicted to act upstream of or within ceramide metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human ACER3 (alkaline ceramidase 3).

NR:

description
PREDICTED: alkaline ceramidase 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236008 True 5526 lncRNA 0.38 9 8158038 8166662
XM_007244740.3 False 1632 mRNA 0.47 11 8149119 8162185

Neighbor

gene id symbol gene type direction distance location
LOC103042468 NA coding upstream 775 8145249 ~ 8148344 (+)
LOC103042774 LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107653702,LOC107583375,LOC107741170 coding upstream 5661 8135579 ~ 8143458 (+)
LOC103039588 LOC108435821 coding upstream 86359 8030275 ~ 8062760 (+)
LOC103044917 LOC108435817 coding upstream 389269 7739611 ~ 7759850 (+)
LOC103040212 LOC108435805 coding upstream 463660 7683167 ~ 7685459 (+)
LOC103038957 NA coding downstream 7213 8173875 ~ 8186496 (+)
LOC103041846 LOC108433277 coding downstream 22067 8188729 ~ 8209285 (+)
LOC103038651 NA coding downstream 22558 8189220 ~ 8191739 (+)
LOC103041345 LOC108433277 coding downstream 28434 8195096 ~ 8198161 (+)
LOC103038343 NA coding downstream 50130 8216792 ~ 8223333 (+)
G174263 NA non-coding upstream 84318 8006273 ~ 8064801 (+)
G174255 usp25 non-coding upstream 245277 7902800 ~ 7903842 (+)
G174256 usp25,LOC107680319 non-coding upstream 256556 7883716 ~ 7892563 (+)
G174176 LOC108435816 non-coding upstream 477259 7667401 ~ 7671860 (+)
G174170 NA non-coding upstream 503568 7644929 ~ 7645551 (+)
G174366 NA non-coding downstream 63646 8230308 ~ 8230617 (+)
G174408 NA non-coding downstream 331793 8498455 ~ 8498951 (+)
G174424 NA non-coding downstream 395848 8562510 ~ 8562865 (+)
G174438 NA non-coding downstream 488862 8655524 ~ 8658542 (+)
G174559 NA non-coding downstream 925779 9092441 ~ 9094096 (+)
G174259 usp25 other upstream 223679 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 1607740 6536327 ~ 6541379 (+)
G173501 NA other upstream 2965342 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 2996283 5103727 ~ 5152836 (+)
ptbp3 ptbp3,LOC106592370 other upstream 3244917 4800629 ~ 4904202 (+)
LOC103038455 NA other downstream 382222 8548884 ~ 8552610 (+)
rexo2 NA other downstream 960046 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 2454366 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 2665506 10832168 ~ 11019418 (+)
G174994 NA other downstream 3263209 11429871 ~ 11436530 (+)

Expression


Co-expression Network