CI01000012_13533459_13538332 (PBLD2, PBLD)


Basic Information

Item Value
gene id CI01000012_13533459_13538332
gene name PBLD2, PBLD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13533390 ~ 13538443 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_13533459_13538332.mRNA
TTATAAAATGTTTCTCTGTAATACATTTAGGAGCTGAAAGACGATCTTTATCAAAGCATTGCTGCTGAGATGAATTTATCAGACACTGCCTTCATCACAAAACGAAATTCTATGGATTTTTCCTCAGAGAATGTCAACCCCGTTTTGGTGTTTGAGACTATGAGTGGGGAGCTTCATGTGTGCCAGCATGAAGAATCTCTAATAATGGACTTCCCCTTAAACAAACCAAAGCCCCAGGCTGTTGTTGGAGACTTAGCCATTCAGGATGTGTGCTACTGTCCAACAACAAAGTACCTGATGATTCGTCTAGCTGACACATGTGACAGATCTGAACTTACATCTTTGAGGCCTGAAGCAGAAGCTCTACTGAAAAACGAATCTACTGGGAAGATTAAAGGCGTCACTGTTACAATGAAAGGATTTCCAAACGCACAGCCTGGATATGACTTCTATTCCCGTTTCTTTGCCCCTTGGTATGGGGTCCTTGAAGATCCAGTCTGTGCCTACCAGTGCTCCAGTCGTGGAGGTGAACTGGAGCTGGAGCTGAGGGATGATGGTCGACTCAACATCAGCGGTTCAAAGTCTAACTTGATTTCAAAGACTGCTCTAAAATACCTAAAAAAGGTACAAGAAAGAAACCTTAGAGAGCAGAAGAGCTGTAAATCAATGGAAATTCCAATATTTATTGTTGATGCTTTTACCAATGTACCTTTCAAAGGTAATCCTGCTGCAGTATGTCTTATAGAGAACGTGCAAGGTTTGGGTTACGCTGGTTTTCCCCCAAAAGTGAGGTTCCACTATGTGGACATGCAACACTGGCCTCAGCAGCAGTGCTATTTTACCTTAAAAACTATGAGTGGGGAGCTTCATGTGCGCCAGCATGAAGAATCTCTAATAATGGACTTCCCCTTAAACAAACCAAAGCCCCAGGTACAACATGAAATCAAGGATCTTTTGAAGGCTGCTGTTGGAGACTTACCCATTCAGGATGTGTGTTACAGTCCAACCACAAAGAAATTAATGATTCGTCTAGCTGACACATGCAACAGGTCTGAACTTACATCTTTGAGGCCAGAGACAGAGACTCTTCTGAGAAATGAGACCACTGGTAAGATTAAAAGTCTCATCATTACATTGAAAGAAACACAGACCACTCAGACTGGATATGACTTCTACTCCCGTGTCTTTGCACCCTGGGTTGGTGTCCCTGAAGATCCAGTCACTGCTTACCAGTGTTCCAGTCGTGGTGGTGAGGTAAAGCTGGAGATAAGAGATGACGATCGATTGGACATCATTGGTCAGGCGCAGATCATTCTTCAGGGAACTCTTAAAATCTAGACAAACTTGCACATTCATTGAATTTGAGGATATGGTTTTGATGGAAATCAAGTGCATTTAATTTTCACTTTATATTAATGTGAAGGTGCATTCTAAGTTATGTGCCATTTA

Function

symbol description
pbld2 Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. Is expressed in myotome. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing).
pbld Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing).

NR:

description
Phenazine biosynthesis-like domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_13533459_13538332.mRNA True 1449 mRNA 0.42 12 13533390 13538443

Neighbor

gene id symbol gene type direction distance location
CI01000012_13527966_13529695 PBLDP, PBLD coding upstream 3628 13527184 ~ 13529762 (+)
CI01000012_13522084_13525252 PBLD2, PBLD coding upstream 8071 13522084 ~ 13525319 (+)
CI01000012_13498541_13510228 RUFY2 coding upstream 23125 13498541 ~ 13510265 (+)
CI01000012_13471010_13484053 TSPAN15 coding upstream 47378 13471010 ~ 13486220 (+)
CI01000012_13445338_13452629 HK2, HKI, HK1, HK1.L coding upstream 80761 13444855 ~ 13452629 (+)
CI01000012_13551086_13554035 NA coding downstream 12330 13550773 ~ 13554312 (+)
CI01000012_13559514_13590448 PSD coding downstream 21071 13559514 ~ 13590493 (+)
CI01000012_13619458_13633023 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding downstream 80566 13619009 ~ 13633801 (+)
CI01000012_13653033_13672573 NA coding downstream 114590 13653033 ~ 13672988 (+)
G76600 NA non-coding upstream 12072 13520992 ~ 13521318 (+)
CI01000012_13442338_13442897 NA non-coding upstream 91726 13440853 ~ 13443219 (+)
G76569 NA non-coding upstream 144237 13388853 ~ 13389153 (+)
G76594 NA non-coding downstream 78 13538521 ~ 13539179 (+)
G76629 NA non-coding downstream 17550 13555993 ~ 13556230 (+)
G76630 NA non-coding downstream 18982 13557425 ~ 13557687 (+)
G76584 NA non-coding downstream 53056 13591499 ~ 13593268 (+)
G76657 NA non-coding downstream 160444 13698887 ~ 13701764 (+)
CI01000012_13029637_13033226 RGS17 other upstream 494491 13029435 ~ 13038899 (+)
G76374 NA other upstream 784221 12745531 ~ 12749169 (+)
G76385 NA other upstream 857724 12630755 ~ 12675666 (+)
G75533 NA other upstream 2387651 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 3309103 10223697 ~ 10236276 (+)
G76645 NA other downstream 113416 13651859 ~ 13652234 (+)
G76656 NA other downstream 165044 13703487 ~ 13739731 (+)

Expression


Co-expression Network