G174408


Basic Information

Item Value
gene id G174408
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8498455 ~ 8498951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236172
AGGGCTTATAGATCTTGTCGAGATCTTTAAATTAATAGCAGGTTGCGAAATGATACGTCGTACGGTTTTCGTACAAATGTCGTACGAAGTTTccccatagaaatgaatggggggcccagagttccatctcgcacacgagcagctctgcgcacggaaccccttctctcccctgctcctccagtactgtgagtgtatggaggagctgctgtatggagcagctatcagtcaaaagtttggacaccccggcacccCAGCCAGGGCTCAGCAGCCACCtattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaatacgttagcaacttcctagcaaccacttagcaaccactttagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236172 True 411 lncRNA 0.50 2 8498455 8498951

Neighbor

gene id symbol gene type direction distance location
dscam dscama,LOC108433273,LOC108277288,LOC107653721,LOC107758699,LOC107679528 coding upstream 49299 8317232 ~ 8449156 (+)
tmprss2 NA coding upstream 211047 8274202 ~ 8287408 (+)
acat1 acat1,LOC107653722,LOC107583377,LOC107758700,LOC107565255,LOC107679529 coding upstream 229092 8260946 ~ 8269363 (+)
LOC103038016 NA coding upstream 238064 8252902 ~ 8260391 (+)
LOC107197515 NA coding upstream 249134 8245886 ~ 8249321 (+)
LOC103036350 LOC108433269 coding downstream 87232 8586183 ~ 8602747 (+)
ei24 ei24,LOC106567936,LOC106603545 coding downstream 124260 8623211 ~ 8634947 (+)
stt3a stt3a coding downstream 137634 8636585 ~ 8646125 (+)
foxred1 foxred1,LOC107682837 coding downstream 147931 8646882 ~ 8657053 (+)
dcps dcps,LOC107577914,LOC107577915 coding downstream 167545 8666496 ~ 8673111 (+)
G174366 NA non-coding upstream 267838 8230308 ~ 8230617 (+)
G174263 NA non-coding upstream 433654 8006273 ~ 8064801 (+)
G174255 usp25 non-coding upstream 594613 7902800 ~ 7903842 (+)
G174256 usp25,LOC107680319 non-coding upstream 605892 7883716 ~ 7892563 (+)
G174176 LOC108435816 non-coding upstream 826595 7667401 ~ 7671860 (+)
G174424 NA non-coding downstream 63559 8562510 ~ 8562865 (+)
G174438 NA non-coding downstream 156573 8655524 ~ 8658542 (+)
G174559 NA non-coding downstream 593490 9092441 ~ 9094096 (+)
LOC111195017 NA non-coding downstream 641198 9140149 ~ 9141298 (+)
G174583 NA non-coding downstream 814953 9313904 ~ 9314138 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 331793 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 573015 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 1957076 6536327 ~ 6541379 (+)
G173501 NA other upstream 3314678 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 3345619 5103727 ~ 5152836 (+)
LOC103038455 NA other downstream 49933 8548884 ~ 8552610 (+)
rexo2 NA other downstream 627757 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 2122077 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 2333217 10832168 ~ 11019418 (+)
G174994 NA other downstream 2930920 11429871 ~ 11436530 (+)

Expression


Co-expression Network