LOC103038455


Basic Information

Item Value
gene id LOC103038455
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 8548884 ~ 8552610 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236173
TGCGTGTATATGTGTGGATCTTTTAGCTCTTAAAGCTCTGTCCTCTGAGCACACTCATCTTTAAATCtcccttttttgttgttgcagtctttgttttttaatttctatttttttaatccacGCGCTTGCACACACTCACGCGACGCAGCCACCATGCCTAAGAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAGAGGAGATCAGCAAGATTGGTGAACAAACCCGCACCTCCAAAGGCAGAGCCCAAGCCAAAGGTGAAGAAGGCACCTGCCAAACCTAAGAAGTCTAAGGAGGCAGAAAAGCccaaggaggaggagaagaaagaggagGTCCCTGCCGAAAATGGCGAGGCAAAGCCAGAGGATGAGGCACCAGCaacagaagaggaggagaaggacgACGCGGCAGAATAACAGCACTCTGCTGCCATCTCTCACCAGTGCTCCCTGTACCTCTTTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGGTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGAAAAGATACATTTTGAGAGGGATTTCATCACATCCCACATTTTTACATCTCCAGAACAGTTATTGTCATTGAAAATGtcagttttcttctcttttttccccttttctttctttgttcctCACGTTTTAAAACCACGCGTACTCTGGCGTGTTGTTCACGCAGACGGTTAGACAACATTTCGAGCTTGCCCGAATGACTAACATTCCATTGGCTCTATGAGGGATGAttttggaattattttttttttccggtttttgttttgattttttttgtaacctgtaatgtatgtgtgtgtgttggggaggggGGTGTGAATTGctcattgttttattgtttataatgaGAAAGATTACTTGTAGAATGTTTGTAAGCCGTGCTCCATATGTTAACTCTTGTACCGatgcagtttttttctttaaccattCTGCTTAATAAACCTATTCTCTAGTACTGGAGTTTTCCATGTCAGGCCTGTGCATTGCGTGTATTGATTTGGTTTTGTTTTCCTCTTCTTTCTGTGATAGCACCACAATAGATTTGTATAgcagctgtgaaaaaaaatacaaggaaTTTTTTGACTTTATATGCAGTGTGTAATAATGGTACGTTGTCCGGATGGTAAAAATGGAATATCGTTGTTTTTTAGCCAAGCTAACGGTTATTTTCGACAGATCAACTTTTTGAGGCGCTAATTCTCGGCCCCCTTTTTGGGGAGCTTGGATGGTCAAGTGTAAGATCTCTTGAACTGTACAGCACTCATACCAGCAGTAGCAATATTCTTGTGCAAGTACAAAATGTACAGTTTCTTTTTGATCATTGTTTATAGATGTATCTCTGTGTATTGTTTGGTTTAAACAAGCCAATAAAAATGGGTTGTGAC
>XM_007244728.3
GCTGGAAACATTACCGTCTTCTTAtactgagactgtgtgtgtatgtgtgtgtgtgtgtgagggagagcgTGCGTGTATATGTGTGGATCTTTTAGCTCTTAAAGCTCTGTCCTCTGAGCACACTCATCTTTAAATCtcccttttttgttgttgcagtctttgttttttaatttctatttttttaatccacGCGCTTGCACACACTCACGCGACGCAGCCACCATGCCTAAGAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAGAGGAGATCAGCAAGATTGGTGAACAAACCCGCACCTCCAAAGGCAGAGCCCAAGCCAAAGGTGAAGAAGGCACCTGCCAAACCTAAGAAGTCTAAGGAGGCAGAAAAGCccaaggaggaggagaagaaagaggagGTCCCTGCCGAAAATGGCGAGGCAAAGCCAGAGGATGAGGCACCAGCaacagaagaggaggagaaggacgACGCGGCAGAATAACAGCACTCTGCTGCCATCTCTCACCAGTGCTCCCTGTACCTCTTTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGGTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGAAAAGATACATTTTGAGAGGGATTTCATCACATCCCACATTTTTACATCTCCAGAACAGTTATTGTCATTGAAAATGtcagttttcttctcttttttccccttttctttctttgttcctTTTTCTGTTCAAAGTGGGAGAGTGGGGCACGTTTTAAAACCACGCGTACTCTGGCGTGTTGTTCACGCAGACGGTTAGACAACATTTCGAGCTTGCCCGAATGACTAACATTCCATTGGCTCTATGAGGGATGAttttggaattattttttttttccggtttttgttttgattttttttgtaacctgtaatgtatgtgtgtgtgttggggaggggGGTGTGAATTGctcattgttttattgtttataatgaGAAAGATTACTTGTAGAATGTTTGTAAGCCGTGCTCCATATGTTAACTCTTGTACCGatgcagtttttttctttaaccattCTGCTTAATAAACCTATTCTCTAGTACTGGAGTTTTCCATGTCAGGCCTGTGCATTGCGTGTATTGATTTGGTTTTGTTTTCCTCTTCTTTCTGTGATAGCACCACAATAGATTTGTATAgcagctgtgaaaaaaaatacaaggaaTTTTTTGACTTTATATGCAGTGTGTAATAATGGTACGTTGTCCGGATGGTAAAAATGGAATATCGTTGTTTTTTAGCCAAGCTAACGGTTATTTTCGACAGATCAACTTTTTGAGGCGCTAATTCTCGGCCCCCTTTTTGGGGAGCTTGGATGGTCAAGTGTAAGATCTCTTGAACTGTACAGCACTCATACCAGCAGTAGCAATATTCTTGTGCAAGTACAAAATGTACAGTTTCTTTTTGATCATTGTTTATAGATGTATCTCTGTGTATTGTTTGGTTTAAACAAGCCAATAAAAATGGGTTGTGACA

Function

GO: NA

KEGG:

id description
ko05200 Pathways in cancer
ko05224 Breast cancer

RNA

RNA id representative length rna type GC content exon number start site end site
TU236173 False 1440 TUCP 0.40 7 8548953 8552609
XM_007244728.3 True 1537 mRNA 0.41 6 8548884 8552610

Neighbor

gene id symbol gene type direction distance location
dscam dscama,LOC108433273,LOC108277288,LOC107653721,LOC107758699,LOC107679528 coding upstream 99728 8317232 ~ 8449156 (+)
tmprss2 NA coding upstream 261476 8274202 ~ 8287408 (+)
acat1 acat1,LOC107653722,LOC107583377,LOC107758700,LOC107565255,LOC107679529 coding upstream 279521 8260946 ~ 8269363 (+)
LOC103038016 NA coding upstream 288493 8252902 ~ 8260391 (+)
LOC107197515 NA coding upstream 299563 8245886 ~ 8249321 (+)
LOC103036350 LOC108433269 coding downstream 33573 8586183 ~ 8602747 (+)
ei24 ei24,LOC106567936,LOC106603545 coding downstream 70601 8623211 ~ 8634947 (+)
stt3a stt3a coding downstream 83975 8636585 ~ 8646125 (+)
foxred1 foxred1,LOC107682837 coding downstream 94272 8646882 ~ 8657053 (+)
dcps dcps,LOC107577914,LOC107577915 coding downstream 113886 8666496 ~ 8673111 (+)
G174408 NA non-coding upstream 49933 8498455 ~ 8498951 (+)
G174366 NA non-coding upstream 318267 8230308 ~ 8230617 (+)
G174263 NA non-coding upstream 484083 8006273 ~ 8064801 (+)
G174255 usp25 non-coding upstream 645042 7902800 ~ 7903842 (+)
G174256 usp25,LOC107680319 non-coding upstream 656321 7883716 ~ 7892563 (+)
G174424 NA non-coding downstream 9900 8562510 ~ 8562865 (+)
G174438 NA non-coding downstream 102914 8655524 ~ 8658542 (+)
G174559 NA non-coding downstream 539831 9092441 ~ 9094096 (+)
LOC111195017 NA non-coding downstream 587539 9140149 ~ 9141298 (+)
G174583 NA non-coding downstream 761294 9313904 ~ 9314138 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 382222 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 623444 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 2007505 6536327 ~ 6541379 (+)
G173501 NA other upstream 3365107 5183491 ~ 5183777 (+)
nrarp nrarp,nrarpa other upstream 3396048 5103727 ~ 5152836 (+)
rexo2 NA other downstream 574098 9126708 ~ 9153133 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 2068418 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 2279558 10832168 ~ 11019418 (+)
G174994 NA other downstream 2877261 11429871 ~ 11436530 (+)
G175108 NA other downstream 3356262 11908872 ~ 11913456 (+)

Expression


Co-expression Network