G174582


Basic Information

Item Value
gene id G174582
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9319390 ~ 9321343 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236403
TTTATTAAAGCATCATTTCATAAACATATTATTCAGGTGAAGTACCATAACGGTAATAGAAGCATAGGCATAAACCGGCCCGGTTGCTCCCGAGACTCTGTGGAAACGCTGTGAAGGAGGGATGTGGGGAGGAAGAAGCCGGAGCTGCTTTCATATGAACTTATTCAGTCTTTAACTCTGACCTACATGTGTTGCAATTTTATCACTGGCCAACTCTGATCTTGTACTGTTGTGAAACTATGCCAGCTTCTCTGCTGTATTTTAGGACATGAGTTGGTGTTCCACTTTTGCTCGCAGTTTGTagtgctattcttttttttttctttctttcttttttccagcTTTCATTTTTCTCGTTTTTACTGTCACAGACCTGGTTAAAAAAGACACACTCCCAGTTTCCGTGTTTTAATGAAAGCGGGTGCTGGGTGTAATAGGAAAGCATCCCTCGGAGACGGTCCTGCTGCTTTAGGCTACAGGATCCAGAGCTCTTTGAATGAAATGAGATGAGTCAATGACTGATCACTGGAGGTCTTTTAGGGGGTAGtttgatggaaaaaaaatcaaatttgcaCAGTTTTCCCACATTTTAAACCAAATGTAGCTGAATAGATGACTTGTGTTTGCTGTCTGAAGGTTGCTCATGAAGgattacatatacagctctggaataaaatgagaccacttaaaaatgatgagtttctttgattttaccaaattgaaatactctaaaatacaatcaagaggaagatggatgatcacaagccatcaaaccaagctgaacttcttgaatgtatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgcaagactggtggaggagaacatgatgccaagatgcacgaaaactgtgattaaaaactaaccAGGGTTATCaaataccaaatattgatttctgaagtcttactttttaaatatgaacttgtttgaaagctctgcatcttttttgttatttcagacatttcttattttttcctcaaataaatgctctaaatgacaacaatatttttctttggaatataggagaaatgttgtctgtagtttatagaacaaaaaacaatattaattttactcaaacatatacctataaatagcaaaatcagagaaaCTGGTTAAACGTTTCTTTATATTCAAGAAAAACAACCCAGTTAtttgaacccaagatatttctaACATATGTCTGTGTCgagaaaagttttaaaaaaaaaagtagtttttatgctgtttaaatgaaatttaagtaatttttttgaagtaaattttaacagaaaactgtattttaattgttttcccATTTCCAATACAgccccaaactttttttttcatttgggtGTCGATGATTCCTTGTGGAAATGTTTCTAAAATAGTCAAATTTGTGAGATAAAAAGTGTCAAAGATTCTTAGTTATTGGGTTCAATCagccataaaaaatatatatattttaaatgcccatatcgtcgctgtccgatgaaaaaaaacacttatctccaaaagagcaactttacgggagagagaaaaaaaacttgtaaactcaATGGAAGTctgtaatgtaaaaagagttcatttcaggtcattttgaagagtttgtattggtctgtttatcaaaaaaaatgttgggattcgtctgttcaaattatgtagtaaactaaaaattgacaaaaatggagataagtgtgtaccactttaaaataagactatccttataaagggtttataaatggtttatagatgagattattaagtattgctaattagattgtaaatgccttaaaatcattaataagcagttacaacacattaattaaaaggcaacagtgatccgtTGTTTGCGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236403 True 1871 lncRNA 0.33 2 9319390 9321343

Neighbor

gene id symbol gene type direction distance location
LOC103036746 LOC108433260,LOC105011014,LOC106567546,LOC108276559 coding upstream 6007 9206552 ~ 9313383 (+)
kirrel3 kirrel3,kirrel3a,LOC107730946,LOC107758686,LOC107565265 coding upstream 228597 8817587 ~ 9090793 (+)
kcnj1 kcnj1,LOC108433247 coding upstream 635439 8678239 ~ 8683951 (+)
dcps dcps,LOC107577914,LOC107577915 coding upstream 646279 8666496 ~ 8673111 (+)
foxred1 foxred1,LOC107682837 coding upstream 662337 8646882 ~ 8657053 (+)
LOC103036148 gramd1ba,LOC107679517,LOC107730968,LOC108433258 coding downstream 33565 9354908 ~ 9498192 (+)
LOC111194972 NA coding downstream 305101 9626444 ~ 9627785 (+)
LOC111195020 NA coding downstream 319684 9641027 ~ 9642491 (+)
LOC103032234 NA coding downstream 323767 9645110 ~ 9646923 (+)
LOC111194974 NA coding downstream 339581 9660924 ~ 9662061 (+)
G174583 NA non-coding upstream 5252 9313904 ~ 9314138 (+)
LOC111195017 NA non-coding upstream 178092 9140149 ~ 9141298 (+)
G174559 NA non-coding upstream 225294 9092441 ~ 9094096 (+)
G174438 NA non-coding upstream 660848 8655524 ~ 8658542 (+)
G174424 NA non-coding upstream 756525 8562510 ~ 8562865 (+)
G174609 NA non-coding downstream 50098 9371441 ~ 9373948 (+)
LOC111195021 NA non-coding downstream 439209 9760552 ~ 9762446 (+)
G174719 NA non-coding downstream 498768 9820111 ~ 9820433 (+)
G174738 NA non-coding downstream 901367 10222710 ~ 10223083 (+)
G174783 NA non-coding downstream 989850 10311193 ~ 10311590 (+)
rexo2 NA other upstream 166257 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 766780 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 1152728 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 1393950 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 2778011 6536327 ~ 6541379 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 1299685 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 1510825 10832168 ~ 11019418 (+)
G174994 NA other downstream 2108528 11429871 ~ 11436530 (+)
G175108 NA other downstream 2587529 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 2870013 12191356 ~ 12209449 (+)

Expression


Co-expression Network