CI01000012_13551086_13554035


Basic Information

Item Value
gene id CI01000012_13551086_13554035
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13550773 ~ 13554312 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_13551086_13554035.mRNA
ATATATAAACAAAAAGGCTAGCAAAAAGACATTTTAAAATTTAATTTTACAGCTTTTTTGACACTTAAACATTTGACAATGTGTGCCTTTTGGTGTGGTTAACTTTAATATTTGAGGTTGAACTTGAAATAAGAAAGACTTGAATATAACCTGCATGTCATAGTTATTTTAAAATATTTTATATATTGTTGCATTACATGCACAGCTTATTGTAATTTAATACACTTATAACAAAATGGCATTGAAATCTGAGCCTCATCTTTGAAATATTCATGCCAAGCCACCACACACAGACAGTAGAAGGTCTGCTGACATGGACGTTCAAGAAGAAGAACTAAAATGTCCTGTTTGTGTAGAGCCCTTTACAGACCCTGTACGCCTTCCATGTGGGCACAACTTCTGTCAAACCTGCATCCGAGTGGTCTGGAACATGGATGACCCCAAAACATCTAGAGAAGGGCCACTGTTCTGTCCGGAGTGTCAGATCCTCCTTCCTTCTGACCTTAAGCTTGAGATCAACTCAGATCTTCAAAGGAAAGTTCAGGATGTCTTTTCAAGAGCACCTTCGCTGGAAGGATCATCTCGTATGTCACACTCCATTATCATGTGTGATCAGTGCATTGGGAAGACTGAGGTGGCTGTAAAGAGCTGCCTCACCTGCGACGCCTCCCTGTGCTCTGCTCACACTCTCCTGCACCAGCAGAGAGAGGCTTTAAGAGGGCACTCTCTCATCGAAGTGACAGAGGACTTGATTTCCTTCAAGTGTAAGGAGCATGGGGAGGAGCTGAAACTATTCTGTCAGGAGGACCAGACTACTGTGTGTTGTCTGTGCATTGCGCTTGGGGCACACAAAAACCACCAAGCTGTTACGCTTCAAAAGGCATGCTCAGAATTCAAGGAGGTGTTGGAGGCCAACAAATTACTTCTTCTACAGAGGAAACATTTAGCTGAGTCTGCTATAAAAGATTTGGAGCCATTATTTTCAGAGGTGTCGGAAAACGCAGAAGCATACAGACTCAGAATAGTTGAGAAATACAACAAGATAAAAGCCCAGATTGAGGAGGATCAGAAGCTGATGTTGGCCATTCTGGAAACAGAAGAATTTTACACCAAGAAGTGGCTGAGATGGAGAAATGAGTCACTGGAGTGTCATGTTAAAGATATTAATGCTGCCCTAACATCAAGCCAATCTCTCCTAGAGGAAGAAAATGACATCTTATTTCTTCAGCATCTCAAAAATCATAGACTTGGGTCCCAGGTGGAATTGCCACTTGTGTCTGTGATAGAGCACGAGTACAGCAGCACAGACAAGATGAAGACAGTCGAGCAGCTGGTTGATAACTTAGATGAAGTTGTCTTTCAGAACACTCAGCGGCTGTGGTCTAGTCTCAGAGCAGTAAGTTTAGACCCAGAGACGGCACACCCACAGTTAGAGGTCTCGGCAGACAAGCTGGAGGTACACTGGAGTAAGAAATCAATCCCAGAAAGGAAACGGAAAACAAACATCAGCTCTCAGTACAGCGTCCAGGTCAAGGAGAGATTCTCCAGCGGCTCCCACTACTGGGAGGTGGCCGTCTGGAAGAAACCCTATTGGTTGATTGGCCTGTCATATGGGTCAGCTACCAGAGGTCAGGATTTTGAGCATCTCAACAGTGACTTTAACAATGTGTTCTGCTACATCTATCATGGTAATGGGAAATATCTTGTTTGTCAGGACTCAAATGAAAAGTCCCTGGCAGTGAGCAAAACAATCCAAAAACTTGGAGTTTGGGTAGATATCTCGAAAGGAGTCGTGTCTTTTTATGATGGAGATACGCTAACTTTGCTCCACTCATTCCGCGTTGAGTTTTCTGGCCCATTCTGTCCCATTTTTAATCCTTGTATTGACATAAATGGCCAAAACAGTCAGCCTCTTTCCATTGTCCATCTACGAAACAAAAATATTTCGTAAAGCGCCTCACAAAATGCTCAATCAATTTCCTTTACAATAATAATACATGGCTTATTATGTAGTGTGTATCTGTCCATTTAATATAATTTGGTTTGGTGTAGTTATCACAGTAAATATCTCACATTCTCTTTGGTTCTTTTTTTTTTGTGTAATTTCTGCAACTATGGATAGCTACTGTATAAAAATTAACCCATGTCTCATTGTGATCTGGGTGTTTTTAACCTAAAAAGAGGTGTGAGAAGGAGGAACATTTTTGACAACATGCAAATTATATCTA

Function

NR:

description
hypothetical protein cypCar_00001705

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_13551086_13554035.mRNA True 2228 mRNA 0.42 6 13550773 13554312

Neighbor

gene id symbol gene type direction distance location
CI01000012_13533459_13538332 PBLD2, PBLD coding upstream 12330 13533390 ~ 13538443 (+)
CI01000012_13527966_13529695 PBLDP, PBLD coding upstream 21011 13527184 ~ 13529762 (+)
CI01000012_13522084_13525252 PBLD2, PBLD coding upstream 25454 13522084 ~ 13525319 (+)
CI01000012_13498541_13510228 RUFY2 coding upstream 40508 13498541 ~ 13510265 (+)
CI01000012_13471010_13484053 TSPAN15 coding upstream 64761 13471010 ~ 13486220 (+)
CI01000012_13559514_13590448 PSD coding downstream 5202 13559514 ~ 13590493 (+)
CI01000012_13619458_13633023 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding downstream 64697 13619009 ~ 13633801 (+)
CI01000012_13653033_13672573 NA coding downstream 98721 13653033 ~ 13672988 (+)
G76594 NA non-coding upstream 11594 13538521 ~ 13539179 (+)
G76600 NA non-coding upstream 29455 13520992 ~ 13521318 (+)
CI01000012_13442338_13442897 NA non-coding upstream 109109 13440853 ~ 13443219 (+)
G76629 NA non-coding downstream 1681 13555993 ~ 13556230 (+)
G76630 NA non-coding downstream 3113 13557425 ~ 13557687 (+)
G76584 NA non-coding downstream 37187 13591499 ~ 13593268 (+)
G76657 NA non-coding downstream 144575 13698887 ~ 13701764 (+)
G76656 NA non-coding downstream 184861 13703487 ~ 13739731 (+)
CI01000012_13029637_13033226 RGS17 other upstream 511874 13029435 ~ 13038899 (+)
G76374 NA other upstream 801604 12745531 ~ 12749169 (+)
G76385 NA other upstream 875107 12630755 ~ 12675666 (+)
G75533 NA other upstream 2405034 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 3326486 10223697 ~ 10236276 (+)
G76645 NA other downstream 97547 13651859 ~ 13652234 (+)

Expression


Co-expression Network