LOC111195021


Basic Information

Item Value
gene id LOC111195021
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9760552 ~ 9762446 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236563
CCagagccatagagagagagagttgcgtCAACTCCGTTCACTCCAATGGACCAGTTTTTTACAGCAATGGCGGACCGTGGAGCCTGTCAATAGTTCCCGGAAGTTAGCAGCAAATACTATCAGCACAGTGAAGCTGGAGCAGGATACACCATGTGTGGTCCACTTTTACAGGGTTCATTCTTCCGAACTACACAAGTAAACCCATTTTATGTAATCTGTGCTGAttctttggtttatttacatgtgcaatgtactattttcctttagttgatttacatgtgttctgtactttgtttttctgtatgtagCCTCTCTATATTCTGATATCAGTCTTTAAAGTTATATATCATCTCatgtttgttgtaaaaataataaagctgttGCAAATAATGTGGTTCCTCTTTCTTAatccaaataattctgcatgaaaTATTCAGGTGGTGACTTAAGAATATTTGCagatctttgtatcctttgattaaattatttttg
>XR_002651416.1
agccatagagagagagagttgcgtCAACTCCGTTCACTCCAATGGACCAGTTTTTTACAGCAATGGCGGACCGTGGAGCCTGTCAATAGTTCCCGGAAGTTAGCAGCAAATACTATCAGCACAGTGAAGCTGGAGCAGGATACACCATGTGTGGTCCACTTTTACAGGGTTCATTCTTCCGAACTACACAAGTAAACCCATTTTATGTAATCTGTGCTGAttctttggtttatttacatgtgcaatgtactattttcctttagttgatttacatgtgttctgtactttgtttttctgtatgtagCCTCTCTATATTCTGATATCAGTCTTTAAAGTTATATATCATCTCatgtttgttgtaaaaataataaagctgttGCAAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236563 True 492 lncRNA 0.37 2 9760552 9762446
XR_002651416.1 False 386 lncRNA 0.38 2 9760556 9762344

Neighbor

gene id symbol gene type direction distance location
LOC103033609 NA coding upstream 2068 9752333 ~ 9758484 (+)
LOC103030527 NA coding upstream 29561 9723554 ~ 9730991 (+)
LOC103034239 NA coding upstream 60726 9698383 ~ 9699826 (+)
LOC111194977 NA coding upstream 67793 9691302 ~ 9692759 (+)
LOC111195100 NA coding upstream 75417 9683904 ~ 9685135 (+)
LOC111194980 NA coding downstream 543470 10305916 ~ 10308693 (+)
LOC103035292 trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261 coding downstream 825585 10588031 ~ 10614469 (+)
LOC103029337 fbxw11,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099,LOC107678030 coding downstream 871388 10633834 ~ 10654803 (+)
LOC103034638 LOC108437817 coding downstream 928396 10690842 ~ 10695462 (+)
LOC107197089 LOC107197089,LOC108437815 coding downstream 934113 10696559 ~ 10704898 (+)
G174609 NA non-coding upstream 386604 9371441 ~ 9373948 (+)
G174582 NA non-coding upstream 439209 9319390 ~ 9321343 (+)
G174583 NA non-coding upstream 446414 9313904 ~ 9314138 (+)
LOC111195017 NA non-coding upstream 619254 9140149 ~ 9141298 (+)
G174559 NA non-coding upstream 666456 9092441 ~ 9094096 (+)
G174719 NA non-coding downstream 57665 9820111 ~ 9820433 (+)
G174738 NA non-coding downstream 460264 10222710 ~ 10223083 (+)
G174783 NA non-coding downstream 548747 10311193 ~ 10311590 (+)
G174788 NA non-coding downstream 573460 10335906 ~ 10336194 (+)
G174790 NA non-coding downstream 715845 10478291 ~ 10479571 (+)
rexo2 NA other upstream 607419 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 1207942 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 1593890 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 1835112 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 3219173 6536327 ~ 6541379 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 858582 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 1069722 10832168 ~ 11019418 (+)
G174994 NA other downstream 1667425 11429871 ~ 11436530 (+)
G175108 NA other downstream 2146426 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 2428910 12191356 ~ 12209449 (+)

Expression


Co-expression Network