G174788


Basic Information

Item Value
gene id G174788
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10335906 ~ 10336194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236658
ctcttggcatcattctctcaatgagcttcaagaggtggtcacctgataTGGTTTTCCAatagtcttgaaggaaggagttctcagaggtgtttattagcacttgttgcccctttgccttcttcactctgtggtccagctcaccccaaaccatctggattgggttcaggtccggtgactgtggaggccaggtcactttttgttaagtacataaaactccacatgtgttcattcatagttttggtgccttcagtgagaatctacaatgtaaatagtcatgaaaataaagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236658 True 289 lncRNA 0.43 1 10335906 10336194

Neighbor

gene id symbol gene type direction distance location
LOC111194980 NA coding upstream 27213 10305916 ~ 10308693 (+)
LOC103033609 NA coding upstream 577422 9752333 ~ 9758484 (+)
LOC103030527 NA coding upstream 604915 9723554 ~ 9730991 (+)
LOC103034239 NA coding upstream 636080 9698383 ~ 9699826 (+)
LOC111194977 NA coding upstream 643147 9691302 ~ 9692759 (+)
LOC103035292 trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261 coding downstream 251837 10588031 ~ 10614469 (+)
LOC103029337 fbxw11,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099,LOC107678030 coding downstream 297640 10633834 ~ 10654803 (+)
LOC103034638 LOC108437817 coding downstream 354648 10690842 ~ 10695462 (+)
LOC107197089 LOC107197089,LOC108437815 coding downstream 360365 10696559 ~ 10704898 (+)
LOC111195028 LOC108437795 coding downstream 371130 10707324 ~ 10709830 (+)
G174783 NA non-coding upstream 24316 10311193 ~ 10311590 (+)
G174738 NA non-coding upstream 112823 10222710 ~ 10223083 (+)
G174719 NA non-coding upstream 515473 9820111 ~ 9820433 (+)
LOC111195021 NA non-coding upstream 573460 9760552 ~ 9762446 (+)
G174609 NA non-coding upstream 961958 9371441 ~ 9373948 (+)
G174790 NA non-coding downstream 142097 10478291 ~ 10479571 (+)
G174792 NA non-coding downstream 147390 10483584 ~ 10484130 (+)
G174798 NA non-coding downstream 200892 10537086 ~ 10570162 (+)
G174801 LOC103045071 non-coding downstream 236286 10572480 ~ 10572899 (+)
G174807 NA non-coding downstream 318849 10655043 ~ 10655689 (+)
rexo2 NA other upstream 1182773 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 1783296 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2169244 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2410466 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 3794527 6536327 ~ 6541379 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other downstream 284834 10621028 ~ 10631765 (+)
G174874 LOC108437803 other downstream 495974 10832168 ~ 11019418 (+)
G174994 NA other downstream 1093677 11429871 ~ 11436530 (+)
G175108 NA other downstream 1572678 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1855162 12191356 ~ 12209449 (+)

Expression


Co-expression Network