LOC103028819 (etf1,etf1b,LOC108437808,LOC107552075)


Basic Information

Item Value
gene id LOC103028819
gene name etf1,etf1b,LOC108437808,LOC107552075
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10621028 ~ 10631765 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236670
tttttttttttttttccctcctttgttTTTTGGTGGGCCTTGTTTCTGCTGGATATCAGTATAGTGGTGATTCGTTCCAGGCCAGCTAAATTCTACCTGCCCTGCTCCTCCTGTCCCAGTGTGCACATGACCTGACCGTGCACCTGAAGATGTCTTCCCCGCAGAAGGACCATCTCTGAGCTGGATCTCCTTTCCAGTTCTGCTGCATTTATGTAAAGAAGGCAGGTTTGCATACGCCACTTATATGCTTTACCACCCCAGAACAAAAAATGCCCACCCCCATCCTCATACGAGCCATGTTTGCGTGCCTGAACCGTGTGAtgtgtgtggaaaaaaataactgatGGCATAGTTCACCAGAGTCTGGACCTTTTTATTGTATGCCTTGTGGTATTTTAATGATTTGGACTTTTAAGCTTTGGAGCTTATAGCTCTTCTTGACTGAACAGGCCAATTGAAAAGCAGATAGGATTCTAATCATGGTGGAGGGGCTCTCCGCTTAACTGGACTATTACAGCATGGATGTGCGACTCTTATTTAGGGTTTACGTCCATCCTTTATGCCTGTAACCACCCCCCTTAAGTTAGTTAACTAGAATTCAAGCCCTCCACTTTGCCTAGTCATTTAATGGCAATATTCAGATTAGGTTTGGGAGGTAAAGATGAGAACATACTGGACATGATCAGTAATTGTGGCACggtctcatttatttttattgtttttttttttatttgtcagatTTACTAGGCAGCAGGCAAACCCAATGATGTAGTCTAATAGGAGAGAAGTAATCACAACAAAGAGGCTCCCTATTTTAACAGATATTTTCTGTATTCATCTCCTTGCTCAATCCAtcaatattttgtataaatcATTTGTTACATAAGGTCACAGATGTATTAAACGTTCTCATTGTTTGCAaat
>XM_007237791.3
ttagaaaaaaatgtgagcGCCGCCTCTCAGCCGGACCACGCCGCGCGCAGCGAGAGAGAACCGGTGAACTGCGAGCAGCCGTCTCTGATAACGACACGCTGAAAGATGGCGGACGACCCGAGTGCGGCGGACAGGAACGTGGAAATCTGGAAGATCAAGAAGCTGATCAAAAGTCTTGAAGCTGCCAGAGGGAATGGTACCAGTATGATCTCCCTAATCATCCCTCCAAAGGACCAGATCTCCCGTGTGGCTAAGATGCTGGCTGATGAATTTGGCACAGCCTCTAATATTAAGAGCAGAGTGAACAGACTCTCAGTGCTGGGTGCCATCACTTCCGTACAGCAGAGACTCAAACTCTACAATAAggtgCCTCCCAATGGTCTGGTTGTGTACTGTGGCACCATTGTAACGGAGGAGGGCAAAGAGAAGAAAGTCAACATTGACTTTGAACCCTTTAAACCAATCAACACATCCCTGTATTTATGTGACAACAAGTTCCACACAGAGGCTCTCACTGCATTGCTCTCGGATGACAGCAAGTTTGGGTTCATTGTGATTGATGGTAGTGGCGCCCTCTTCGGAACTCTGCAGGGCAACACGAGAGAGGTGCTGCACAAGTTCACTGTGGACTTGCCCAAAAAGCACGGCAGAGGAGGTCAGTCTGCTTTGCGTTTCGCCCGTTTGAGAATGGAGAAGAGACACAACTATGTGAGAAAGGTGGCAGAGACGGCCGTCCAGCTGTTTGTATCCAACGACAAGGTCAACGTGGCTGGGATGGTTCTTGCTGGATCAGCTGACTTCAAGACTGAGCTTAGTCAGTCAGACATGTTTGACCCGAGGTTACAAGCGAAGGTGCTGAAACTCGTTGACATTTCTTATGGAGGGGAGAATGGGTTTAATCAGGCCATCGAACTGTCTGCCGAGGTGCTGTCCAACGTCAAATTCATCCAAGAGAAGAAACTAATAGgACGCTACTTTGATGAGATCAGTCAGGACACAGGAAAGTACTGTTTTGGAGTGGAAGACACACTCAAAGCGCTGGAGATGGGAGCTGTGGAGATCCTCATCGTTTATGAGAACCTGGACACTATGCGATATGTTTTGCGCTGCCATGGAACTGAGGGCACTACGCTGGAAAATGATGAGAAGACTCTGTATCTGACACCAGAGCAGGAGAAGGATAAATCTCACTTCACAGACAAGGAGACCGGGCAAGAGCATGAACTCTTAGAGAGCATGCCACTGCTCGAGTGGTTTGCCAACAACTACAAGAAATTTGGGGCCACACTGGAGATTGTGACGGACAAGAGCCAGGAGGGGTCGCAGTTTGTGAAAGGATTTGGCGGTATTGGAGGAATCTTGCGGTACCGGGTGGATTTTCAGGGCATGGAGTATGTGGGGGAGGATGATGAGTTATTTGATTTAGATGACTACTAGGTAGTCGGGACTGACAAACCGGAGATTTTTCAAAAGTCAAGGATCTCTCCCTCTACCGCTCGGAGAATGGATGGGGAGGAGGGTGAAGGCAGGGAGGGTGAATCGATGACTAGGAGATTACGACGCGAGGGTGAAGCGAAATGGTATCTACATGTATGTATCCCTGGCATTAGAAAACAGTGACTCCATCTCCTGACTGGATGAAGCTGACTGGGTTTTGCTCCTTTCTACACCTCATTAATGCATCACAACAACAGTACCAACTTGATGAACCCCTCTTCCTGCCCTGCCTTGGCTCTCCAGATGAAATGTATACTGATAAGCTTTTGTAAAACCCTATCCCCACTTTTCTttgttagggctgcacaatatctCAAACAATATCAGAAaatctgaccaaaaaaaaattctgtcacCTTTGTGTCAGTATTGCAAAGGCCAAACcatgataaacaatatattgtgcagccctctttttttttttttttttactatcttcttttttatagttttgctggcctctgctgctactgctgtgCTGTTTTGAGTGTATGGTATTTAGGAAAGGTTTCCTAGAGAGGGGATTGAGTCAAATCCTGGACAACaatgcattttgaatggagagtCTCTATTGAAAAGCTACAGTAGTCCAGGACTGTACTTAAAtcaacacactttttttttttttttttttttttggtcataagTAAAGTATGCGACAAAAAGGAATGACTTCaatctgtgctgcgttcacagCAACCTTATGCTCTTTTGTCCATACTAGCActtctgttcttctgtgtttttttttttctcctttgttTTTTGGTGGGCCTTGTTTCTGCTGGATATCAGTATAGTGGTGATTCGTTCCAGGCCAGCTAAATTCTACCTGCCCTGCTCCTCCTGTCCCAGTGTGCACATGACCTGACCGTGCACCTGAAGATGTCTTCCCCGCAGAAGGACCATCTCTGAGCTGGATCTCCTTTCCAGTTCTGCTGCATTTATGTAAAGAAGGCAGGTTTGCATACGCCACTTATATGCTTTACCACCCCAGAACAAAAAATGCCCACCCCCATCCTCATACGAGCCATGTTTGCGTGCCTGAACCGTGTGAtgtgtgtggaaaaaaataactgatGGCATAGTTCACCAGAGTCTGGACCTTTTTATTGTATGCCTTGTGGTATTTTAATGATTTGGACTTTTAAGCTTTGGAGCTTATAGCTCTTCTTGACTGAACAGGCCAATTGAAAAGCAGATAGGATTCTAATCATGGTGGAGGGGCTCTCCGCTTAACTGGACTATTACAGCATGGATGTGCGACTCTTATTTAGGGTTTACGTCCATCCTTTATGCCTGTAACCACCCCCCTTAAGTTAGTTAACTAGAATTCAAGCCCTCCACTTTGCCTAGTCATTTAATGGCAATATTCAGATTAGGTTTGGGAGGTAAAGATGAGAACATACTGGACATGATCAGTAATTGTGGCACggtctcatttatttttattgtttttttttttatttgtcagatTTACTAGGCAGCAGGCAAACCCAATGATGTAGTCTAATAGGAGAGAAGTAATCACAACAAAGAGGCTCCCTATTTTAACAGATATTTTCTGTATTCATCTCCTTGCTCAATCCAtcaatattttgtataaatcATTTGTTACATAAGGTCACAGATGTATTAAACGTTCTCATTGTTTGCAaa

Function

symbol description
etf1b Predicted to enable sequence-specific mRNA binding activity and translation release factor activity, codon specific. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Predicted to be part of translation release factor complex. Predicted to be active in cytosol. Orthologous to human ETF1 (eukaryotic translation termination factor 1).
etf1 Enables sequence-specific mRNA binding activity and translation release factor activity. Involved in regulation of translational termination. Acts upstream of or within protein methylation and translational termination. Located in cytoplasm.

NR:

description
eukaryotic peptide chain release factor subunit 1

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG:

id description
K03265 ETF1, ERF1; peptide chain release factor subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU236670 False 924 lncRNA 0.41 2 10624861 10631765
XM_007237791.3 True 3156 mRNA 0.45 11 10621028 10631764

Neighbor

gene id symbol gene type direction distance location
LOC103035292 trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261 coding upstream 6559 10588031 ~ 10614469 (+)
LOC111194980 NA coding upstream 312335 10305916 ~ 10308693 (+)
LOC103033609 NA coding upstream 862544 9752333 ~ 9758484 (+)
LOC103030527 NA coding upstream 890037 9723554 ~ 9730991 (+)
LOC103034239 NA coding upstream 921202 9698383 ~ 9699826 (+)
LOC103029337 fbxw11,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099,LOC107678030 coding downstream 2069 10633834 ~ 10654803 (+)
LOC103034638 LOC108437817 coding downstream 59077 10690842 ~ 10695462 (+)
LOC107197089 LOC107197089,LOC108437815 coding downstream 64794 10696559 ~ 10704898 (+)
LOC111195028 LOC108437795 coding downstream 75559 10707324 ~ 10709830 (+)
LOC111195025 NA coding downstream 78742 10710507 ~ 10713283 (+)
G174801 LOC103045071 non-coding upstream 48129 10572480 ~ 10572899 (+)
G174798 NA non-coding upstream 50866 10537086 ~ 10570162 (+)
G174792 NA non-coding upstream 136898 10483584 ~ 10484130 (+)
G174790 NA non-coding upstream 141457 10478291 ~ 10479571 (+)
G174788 NA non-coding upstream 284834 10335906 ~ 10336194 (+)
G174807 NA non-coding downstream 23278 10655043 ~ 10655689 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding downstream 29525 10661290 ~ 10663494 (+)
G174810 NA non-coding downstream 33312 10665077 ~ 10665428 (+)
G174811 NA non-coding downstream 35185 10666950 ~ 10667180 (+)
G174812 NA non-coding downstream 39133 10670898 ~ 10671171 (+)
rexo2 NA other upstream 1467895 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2068418 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2454366 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2695588 7904595 ~ 7925440 (+)
LOC103041160 NA other upstream 4079649 6536327 ~ 6541379 (+)
G174874 LOC108437803 other downstream 200403 10832168 ~ 11019418 (+)
G174994 NA other downstream 798106 11429871 ~ 11436530 (+)
G175108 NA other downstream 1277107 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1559591 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1892376 12524141 ~ 12540201 (+)

Expression


Co-expression Network