G174809 (LOC103034963,LOC108437818,LOC108276546)


Basic Information

Item Value
gene id G174809
gene name LOC103034963,LOC108437818,LOC108276546
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10661290 ~ 10663494 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU236686
gggggggggttggaggtaacctccctgaaatcaacttttgcaacttgggatgtgtGGTGTTGGTACATGCAGCACTTGGCCTAGATGTGAGCCAAGCATTTGGGACAGAATTGGGCCTGTTTTCAAACTGGAGCTGGGTCAATAAAACTTGCATGTGGTATTTGTGATATTTTTGTCCATTAATGACAAAAAGAGCAAAcaattcatgcttttttttagcTACCTGGACTTTAGTACAGTACACCTGCATTGTACATGTGCCAAACATTACTTCTGCATGTGTAGCTCATTAAATGTAACAAGAGTTGCCCATATCAGTCTGAATTTGTAACAATTTATTATACCTGGTAACCGTTATCTTGCTATGGAACAGCATTGCAATTTGacacctattttttttacaatgatttCTTTGACAGTGTTTGAATTTGAGCCTGCCAGTAGTAGCAAGACTGTGCTAAAAGCACATGCATTCATTGAGTGGTTCTTTAGAGACCCAAAACGTTGTTTTTCTATGGCAATACTCCATAAACACTTTCTTTGTGAGTGTGTACATAACTTTAAAATTGTAGAAATTAAACTGTTACTTGACAGGTTTGAGTAGCTGGGGCATAGTGGCTGGCCTATGCTTTTTATGTGCAAATATTGAATTGCTTCAACAAAAGgctcattttaaaaatgcagtCATTTTTAAAGAAGACAAAATTGAATCAGTATGAATATGAAAGTAGAAACAGTGGTATCACACCTCTATTACATCTCTGATCACTGCCATGCAAACTTCACCTGTCATGTTAATCATTTGTTTCCAACCCTTGTTCTGCATACTTGAGTAGTTTCCTGCTCCAACCCACCTCGGTCAAGTCAGGAGTGTTGGGAGAAGAGTGAATACAACAGCAtcctccaggaccagggttggGAACAAGTGACCCAGAGACCAAGGATGCCGCATTTTCCCCCTCTTCTATCTGCAACATACTAAATGGTTCTTGCTGTTgtaaatcctttcttttttttccttctttttttaactGGGGGTGAGGTGAAAGCACCAAAAATCAACATTCATCTATATTTAGCTACATTCATCTGGTCTTTTTTGAAGTAATATGCCTTTACAGTTGTCCTATCGATTAGTGTATCAAGCAGAACATAAATGATGGTTTGAGTCAAAGATGCTATTCAGCTAGAGCTGTAgttgttaaataaaatacatatcagTCCTCCACAGCTGTGGAATGGTCATTGGGTCGTTGACCTCTTATCCAAGGTCAGTCCATAGgttgcttcttttttttgacCAGACTCACTGGAGCCAAGGACACTGGAGGGGTTTGAAGTCTTTGGCTTGAAGTGCTGGGTGCCCTTGTCACAAGTCATGAGTTCTCAGAGTTTAGTTTAGTGCCTGGACACATGCCCAGTCAGTCGTCTTTGGTTACATTAGATTGATTACACAGTGTCTGGTCGGGCTCCCCCCTTGACTAACCTCTACTTTAGAGGTGGGTACCTGCCTGTATTGCACCCTGTGAGGGCTGTGTCATGCCAAGATGGCCCTTGTTGGGTCTTTGTTAGCATTCTTTGGAGCATCTGCTGTTGAACTCATGATGTATGCAGTCAATTAGTCCAGAACTCTTGGCACTGTGTGATCCTTGGCACCATCCATTTGTCCTTTTAGCTGAGTGTACTGACAGTGCCTAGATTTGCTGGTTAGCCTAGTGAATCAGTGCATACGAACCATAACTGAACCGTCAGACAACTATAGCTAGGCaagttctttttctttctgcaaGTTCTCCCACCAACTGGCACAACCAGACGTTTCTTTCCATGGTCATGCAGATGCAGGTCTGCCCTCATCTGCAGTCTTTGTGATTCAGCTGCAAGCTTTCACAACCATGAGGCAACCCAAGGATAAGAATCTCCACCATTCCCTAGGAGTGGATGTCAGGAAGTCCATCACTCTCTTGCGTCCGCCTGCCTCTTTTGCTGACAGTGGTGAAGCTGCAGTGCTGCAGGCTGGGCTGCTCTCCTGGAGGGAATCGCTTCATGAAGTGGACGTCCTGCTGGTTGGGGAGGGTCTGCGGCCCTCGCCGTGGTCGGCCCTTTTTGGTAAAGCCCACGTACCAGCCTGTGTAGCGCGCCGACATCCAGGCTGTATAGTTGTTCTCCAACATCATCTCTATGAAGACGCACTCTGAGTTCCTG

Function

NR:

description
fibroblast growth factor 18-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236686 True 2205 lncRNA 0.44 1 10661290 10663494

Neighbor

gene id symbol gene type direction distance location
LOC103029337 fbxw11,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099,LOC107678030 coding upstream 6487 10633834 ~ 10654803 (+)
LOC103035292 trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261 coding upstream 46821 10588031 ~ 10614469 (+)
LOC111194980 NA coding upstream 352597 10305916 ~ 10308693 (+)
LOC103033609 NA coding upstream 902806 9752333 ~ 9758484 (+)
LOC103030527 NA coding upstream 930299 9723554 ~ 9730991 (+)
LOC103034638 LOC108437817 coding downstream 27348 10690842 ~ 10695462 (+)
LOC107197089 LOC107197089,LOC108437815 coding downstream 33065 10696559 ~ 10704898 (+)
LOC111195028 LOC108437795 coding downstream 43830 10707324 ~ 10709830 (+)
LOC111195025 NA coding downstream 47013 10710507 ~ 10713283 (+)
LOC111195103 NA coding downstream 50612 10714106 ~ 10716445 (+)
G174807 NA non-coding upstream 5601 10655043 ~ 10655689 (+)
G174801 LOC103045071 non-coding upstream 88391 10572480 ~ 10572899 (+)
G174798 NA non-coding upstream 91128 10537086 ~ 10570162 (+)
G174792 NA non-coding upstream 177160 10483584 ~ 10484130 (+)
G174790 NA non-coding upstream 181719 10478291 ~ 10479571 (+)
G174810 NA non-coding downstream 1583 10665077 ~ 10665428 (+)
G174811 NA non-coding downstream 3456 10666950 ~ 10667180 (+)
G174812 NA non-coding downstream 7404 10670898 ~ 10671171 (+)
G174813 NA non-coding downstream 12222 10675716 ~ 10676001 (+)
G174930 NA non-coding downstream 424225 11087719 ~ 11088839 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 29525 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1508157 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2108680 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2494628 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2735850 7904595 ~ 7925440 (+)
G174874 LOC108437803 other downstream 168674 10832168 ~ 11019418 (+)
G174994 NA other downstream 766377 11429871 ~ 11436530 (+)
G175108 NA other downstream 1245378 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1527862 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1860647 12524141 ~ 12540201 (+)

Expression


Co-expression Network